Hb_044086_010

Information

Type -
Description -
Location Contig44086: 3-902
Sequence    

Annotation

kegg
ID rcu:RCOM_1045360
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.26)
nr
ID XP_002523485.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID P17801
description Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2
trembl
ID B9SBW6
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_1045360 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor protein kinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42612: 281-704 , PASA_asmbl_42613: 784-976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044086_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_004074_030 0.1446838234 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_065379_010 0.1964135561 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
4 Hb_001769_130 0.1985502509 - - -
5 Hb_000840_170 0.2012271156 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
6 Hb_003914_030 0.2203918995 - - -
7 Hb_000988_030 0.2265467097 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000185_150 0.2305043224 - - Heme-binding protein, putative [Ricinus communis]
9 Hb_002988_030 0.2430867323 - - hypothetical protein EUGRSUZ_K02073 [Eucalyptus grandis]
10 Hb_006694_030 0.2445706684 - - -
11 Hb_002086_030 0.246427038 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
12 Hb_000671_140 0.2500437783 - - hypothetical protein VITISV_003767 [Vitis vinifera]
13 Hb_069841_010 0.2527623402 - - resistance protein [Quercus suber]
14 Hb_002774_150 0.2580893663 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
15 Hb_000318_240 0.2589938014 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002368_030 0.2612909913 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
17 Hb_045870_010 0.2623158443 - - -
18 Hb_153161_010 0.2664392993 - - phospholipid-transporting atpase, putative [Ricinus communis]
19 Hb_010346_020 0.2681417285 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
20 Hb_161549_010 0.2716195845 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_044086_010 Hb_044086_010 Hb_004074_030 Hb_004074_030 Hb_044086_010--Hb_004074_030 Hb_065379_010 Hb_065379_010 Hb_044086_010--Hb_065379_010 Hb_001769_130 Hb_001769_130 Hb_044086_010--Hb_001769_130 Hb_000840_170 Hb_000840_170 Hb_044086_010--Hb_000840_170 Hb_003914_030 Hb_003914_030 Hb_044086_010--Hb_003914_030 Hb_000988_030 Hb_000988_030 Hb_044086_010--Hb_000988_030 Hb_002368_030 Hb_002368_030 Hb_004074_030--Hb_002368_030 Hb_002774_150 Hb_002774_150 Hb_004074_030--Hb_002774_150 Hb_004074_030--Hb_003914_030 Hb_000991_050 Hb_000991_050 Hb_004074_030--Hb_000991_050 Hb_004074_030--Hb_065379_010 Hb_065379_010--Hb_000840_170 Hb_065379_010--Hb_000988_030 Hb_000185_150 Hb_000185_150 Hb_065379_010--Hb_000185_150 Hb_012528_030 Hb_012528_030 Hb_065379_010--Hb_012528_030 Hb_000812_030 Hb_000812_030 Hb_001769_130--Hb_000812_030 Hb_005401_010 Hb_005401_010 Hb_001769_130--Hb_005401_010 Hb_000671_140 Hb_000671_140 Hb_001769_130--Hb_000671_140 Hb_004545_100 Hb_004545_100 Hb_001769_130--Hb_004545_100 Hb_001769_130--Hb_004074_030 Hb_000840_170--Hb_000185_150 Hb_000840_170--Hb_012528_030 Hb_000840_170--Hb_000988_030 Hb_005529_030 Hb_005529_030 Hb_000840_170--Hb_005529_030 Hb_003096_040 Hb_003096_040 Hb_003914_030--Hb_003096_040 Hb_153161_010 Hb_153161_010 Hb_003914_030--Hb_153161_010 Hb_003060_050 Hb_003060_050 Hb_003914_030--Hb_003060_050 Hb_001817_130 Hb_001817_130 Hb_003914_030--Hb_001817_130 Hb_178127_010 Hb_178127_010 Hb_003914_030--Hb_178127_010 Hb_001565_020 Hb_001565_020 Hb_003914_030--Hb_001565_020 Hb_000988_030--Hb_000185_150 Hb_010346_020 Hb_010346_020 Hb_000988_030--Hb_010346_020 Hb_003638_010 Hb_003638_010 Hb_000988_030--Hb_003638_010 Hb_000732_070 Hb_000732_070 Hb_000988_030--Hb_000732_070 Hb_000345_490 Hb_000345_490 Hb_000988_030--Hb_000345_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.06504 4.9402 2.51887 0.298342 1.67652 1.23078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.312074 2.49396

CAGE analysis