Hb_044486_020

Information

Type -
Description -
Location Contig44486: 15633-17954
Sequence    

Annotation

kegg
ID pvu:PHAVU_009G263100g
description hypothetical protein
nr
ID ABC70464.1
description CASTOR protein [Glycine max]
swissprot
ID Q8VZM7
description Putative ion channel POLLUX-like 1 OS=Arabidopsis thaliana GN=At5g02940 PE=2 SV=1
trembl
ID Q1A3R7
description CASTOR protein (Fragment) OS=Glycine max PE=2 SV=1
Gene Ontology
ID GO:0008324
description ion channel castor-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42798: 15380-45555 , PASA_asmbl_42800: 15800-33308
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044486_020 0.0 - - CASTOR protein [Glycine max]
2 Hb_000359_190 0.0678216072 - - PREDICTED: protein VACUOLELESS1 [Nicotiana sylvestris]
3 Hb_000020_160 0.0718126301 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
4 Hb_001677_200 0.0746937248 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000890_030 0.0762711537 - - plastid CUL1 [Hevea brasiliensis]
6 Hb_010315_020 0.0767831335 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
7 Hb_086063_020 0.0770487834 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
8 Hb_000358_100 0.0782026154 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
9 Hb_000336_020 0.0787748283 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
10 Hb_000954_010 0.0790721152 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
11 Hb_024650_080 0.0794567387 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
12 Hb_007597_010 0.0817390395 - - hypothetical protein B456_010G072300 [Gossypium raimondii]
13 Hb_000320_290 0.0819035085 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
14 Hb_009252_050 0.0832585525 - - protein binding protein, putative [Ricinus communis]
15 Hb_000580_030 0.083267812 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
16 Hb_000098_050 0.0833297231 - - BnaCnng11900D [Brassica napus]
17 Hb_000579_130 0.084170388 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_016461_020 0.0853606799 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001405_210 0.08610035 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
20 Hb_001856_180 0.0864996477 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]

Gene co-expression network

sample Hb_044486_020 Hb_044486_020 Hb_000359_190 Hb_000359_190 Hb_044486_020--Hb_000359_190 Hb_000020_160 Hb_000020_160 Hb_044486_020--Hb_000020_160 Hb_001677_200 Hb_001677_200 Hb_044486_020--Hb_001677_200 Hb_000890_030 Hb_000890_030 Hb_044486_020--Hb_000890_030 Hb_010315_020 Hb_010315_020 Hb_044486_020--Hb_010315_020 Hb_086063_020 Hb_086063_020 Hb_044486_020--Hb_086063_020 Hb_000358_100 Hb_000358_100 Hb_000359_190--Hb_000358_100 Hb_000359_190--Hb_000020_160 Hb_183086_030 Hb_183086_030 Hb_000359_190--Hb_183086_030 Hb_021977_010 Hb_021977_010 Hb_000359_190--Hb_021977_010 Hb_000103_290 Hb_000103_290 Hb_000359_190--Hb_000103_290 Hb_000020_160--Hb_000358_100 Hb_000358_220 Hb_000358_220 Hb_000020_160--Hb_000358_220 Hb_024650_080 Hb_024650_080 Hb_000020_160--Hb_024650_080 Hb_000172_340 Hb_000172_340 Hb_000020_160--Hb_000172_340 Hb_170077_010 Hb_170077_010 Hb_000020_160--Hb_170077_010 Hb_023313_040 Hb_023313_040 Hb_001677_200--Hb_023313_040 Hb_001405_210 Hb_001405_210 Hb_001677_200--Hb_001405_210 Hb_007597_010 Hb_007597_010 Hb_001677_200--Hb_007597_010 Hb_000160_070 Hb_000160_070 Hb_001677_200--Hb_000160_070 Hb_000702_090 Hb_000702_090 Hb_001677_200--Hb_000702_090 Hb_000580_030 Hb_000580_030 Hb_000890_030--Hb_000580_030 Hb_012760_030 Hb_012760_030 Hb_000890_030--Hb_012760_030 Hb_016461_020 Hb_016461_020 Hb_000890_030--Hb_016461_020 Hb_000098_050 Hb_000098_050 Hb_000890_030--Hb_000098_050 Hb_000805_210 Hb_000805_210 Hb_000890_030--Hb_000805_210 Hb_000212_420 Hb_000212_420 Hb_010315_020--Hb_000212_420 Hb_000066_150 Hb_000066_150 Hb_010315_020--Hb_000066_150 Hb_008014_040 Hb_008014_040 Hb_010315_020--Hb_008014_040 Hb_000588_080 Hb_000588_080 Hb_010315_020--Hb_000588_080 Hb_001776_020 Hb_001776_020 Hb_010315_020--Hb_001776_020 Hb_000215_300 Hb_000215_300 Hb_086063_020--Hb_000215_300 Hb_004037_020 Hb_004037_020 Hb_086063_020--Hb_004037_020 Hb_086063_020--Hb_001405_210 Hb_000258_110 Hb_000258_110 Hb_086063_020--Hb_000258_110 Hb_086063_020--Hb_000702_090 Hb_016172_030 Hb_016172_030 Hb_086063_020--Hb_016172_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1499 27.599 23.3542 40.0491 18.8734 17.3663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.59213 11.4627 8.08456 20.039 22.4011

CAGE analysis