Hb_044555_010

Information

Type -
Description -
Location Contig44555: 3-1121
Sequence    

Annotation

kegg
ID pop:POPTR_0006s07230g
description POPTRDRAFT_866249; hypothetical protein
nr
ID XP_012074441.1
description PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
swissprot
ID Q9SZR0
description Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2
trembl
ID A0A067KIJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10308 PE=4 SV=1
Gene Ontology
ID GO:0005506
description choline monooxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044555_010 0.0 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
2 Hb_004097_040 0.1740730455 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
3 Hb_004200_030 0.2018274455 - - PREDICTED: SWR1 complex subunit 6-like isoform X1 [Citrus sinensis]
4 Hb_002081_170 0.2066126357 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
5 Hb_007386_010 0.235250607 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
6 Hb_001979_030 0.2407531341 - - hypothetical protein POPTR_0016s06130g [Populus trichocarpa]
7 Hb_000136_160 0.2429972898 - - calmodulin binding protein, putative [Ricinus communis]
8 Hb_006376_010 0.2480939853 - - PREDICTED: uncharacterized protein LOC104090718 [Nicotiana tomentosiformis]
9 Hb_000205_200 0.2505097274 - - -
10 Hb_006120_090 0.2514204907 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
11 Hb_002259_140 0.2589482447 - - -
12 Hb_021906_010 0.2622198683 - - PREDICTED: cysteine proteinase inhibitor-like [Populus euphratica]
13 Hb_026740_010 0.2704941148 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
14 Hb_002299_020 0.290866448 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001529_070 0.2932859541 transcription factor TF Family: AP2 hypothetical protein POPTR_0018s09900g [Populus trichocarpa]
16 Hb_000890_090 0.2969456792 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF086 [Jatropha curcas]
17 Hb_008215_030 0.3043164309 - - hypothetical protein 3 [Hevea brasiliensis]
18 Hb_033594_070 0.3138748722 - - PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]
19 Hb_124996_010 0.3148851052 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
20 Hb_003502_100 0.3153800463 - - -

Gene co-expression network

sample Hb_044555_010 Hb_044555_010 Hb_004097_040 Hb_004097_040 Hb_044555_010--Hb_004097_040 Hb_004200_030 Hb_004200_030 Hb_044555_010--Hb_004200_030 Hb_002081_170 Hb_002081_170 Hb_044555_010--Hb_002081_170 Hb_007386_010 Hb_007386_010 Hb_044555_010--Hb_007386_010 Hb_001979_030 Hb_001979_030 Hb_044555_010--Hb_001979_030 Hb_000136_160 Hb_000136_160 Hb_044555_010--Hb_000136_160 Hb_006376_010 Hb_006376_010 Hb_004097_040--Hb_006376_010 Hb_002259_140 Hb_002259_140 Hb_004097_040--Hb_002259_140 Hb_004097_040--Hb_000136_160 Hb_021906_010 Hb_021906_010 Hb_004097_040--Hb_021906_010 Hb_004097_040--Hb_007386_010 Hb_004200_030--Hb_007386_010 Hb_004200_030--Hb_002259_140 Hb_004200_030--Hb_021906_010 Hb_004200_030--Hb_004097_040 Hb_004200_030--Hb_002081_170 Hb_002081_170--Hb_004097_040 Hb_001563_020 Hb_001563_020 Hb_002081_170--Hb_001563_020 Hb_033594_070 Hb_033594_070 Hb_002081_170--Hb_033594_070 Hb_002081_170--Hb_007386_010 Hb_007386_010--Hb_021906_010 Hb_002099_010 Hb_002099_010 Hb_007386_010--Hb_002099_010 Hb_007386_010--Hb_002259_140 Hb_006120_090 Hb_006120_090 Hb_001979_030--Hb_006120_090 Hb_000205_200 Hb_000205_200 Hb_001979_030--Hb_000205_200 Hb_003996_030 Hb_003996_030 Hb_001979_030--Hb_003996_030 Hb_000329_260 Hb_000329_260 Hb_001979_030--Hb_000329_260 Hb_001864_090 Hb_001864_090 Hb_001979_030--Hb_001864_090 Hb_000136_160--Hb_006376_010 Hb_000136_160--Hb_000205_200 Hb_002094_040 Hb_002094_040 Hb_000136_160--Hb_002094_040 Hb_000136_160--Hb_004200_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.144405 0.664432 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.21419 0.638112 0 0.148503 0

CAGE analysis