Hb_044653_040

Information

Type transcription factor
Description TF Family: GNAT
Location Contig44653: 43749-45277
Sequence    

Annotation

kegg
ID rcu:RCOM_0962820
description acetyltransferase complex ard1 subunit, putative (EC:2.3.1.88)
nr
ID XP_012065622.1
description PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
swissprot
ID Q3UX61
description N-alpha-acetyltransferase 11 OS=Mus musculus GN=Naa11 PE=2 SV=1
trembl
ID B9RVI5
description Acetyltransferase complex ard1 subunit, putative OS=Ricinus communis GN=RCOM_0962820 PE=4 SV=1
Gene Ontology
ID GO:0004596
description n-alpha-acetyltransferase 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43065: 40488-42881 , PASA_asmbl_43066: 43862-45328
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044653_040 0.0 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
2 Hb_000505_130 0.0609042572 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
3 Hb_005843_140 0.065286069 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
4 Hb_003669_020 0.0720447115 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
5 Hb_002534_100 0.0765166164 - - PREDICTED: malate dehydrogenase, chloroplastic [Jatropha curcas]
6 Hb_000310_020 0.0766377261 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
7 Hb_002303_020 0.078861963 - - PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
8 Hb_002968_040 0.083275357 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
9 Hb_004712_210 0.0840868119 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM50-like [Jatropha curcas]
10 Hb_001931_010 0.0852088607 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
11 Hb_003124_150 0.0854416112 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
12 Hb_000580_020 0.0857911252 - - unnamed protein product [Vitis vinifera]
13 Hb_000419_020 0.0895213722 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000164_100 0.089646736 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
15 Hb_000840_200 0.0911961284 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
16 Hb_002028_090 0.091658304 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
17 Hb_062226_060 0.0922907392 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
18 Hb_000946_090 0.0945072208 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
19 Hb_001728_040 0.0948903006 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
20 Hb_000599_260 0.0952743608 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]

Gene co-expression network

sample Hb_044653_040 Hb_044653_040 Hb_000505_130 Hb_000505_130 Hb_044653_040--Hb_000505_130 Hb_005843_140 Hb_005843_140 Hb_044653_040--Hb_005843_140 Hb_003669_020 Hb_003669_020 Hb_044653_040--Hb_003669_020 Hb_002534_100 Hb_002534_100 Hb_044653_040--Hb_002534_100 Hb_000310_020 Hb_000310_020 Hb_044653_040--Hb_000310_020 Hb_002303_020 Hb_002303_020 Hb_044653_040--Hb_002303_020 Hb_000505_130--Hb_000310_020 Hb_001931_010 Hb_001931_010 Hb_000505_130--Hb_001931_010 Hb_000221_190 Hb_000221_190 Hb_000505_130--Hb_000221_190 Hb_003124_150 Hb_003124_150 Hb_000505_130--Hb_003124_150 Hb_006326_040 Hb_006326_040 Hb_000505_130--Hb_006326_040 Hb_006198_070 Hb_006198_070 Hb_005843_140--Hb_006198_070 Hb_005843_140--Hb_003669_020 Hb_002968_040 Hb_002968_040 Hb_005843_140--Hb_002968_040 Hb_006355_040 Hb_006355_040 Hb_005843_140--Hb_006355_040 Hb_005843_140--Hb_000505_130 Hb_003669_020--Hb_006198_070 Hb_003669_020--Hb_000310_020 Hb_011512_070 Hb_011512_070 Hb_003669_020--Hb_011512_070 Hb_003669_020--Hb_000505_130 Hb_004712_210 Hb_004712_210 Hb_002534_100--Hb_004712_210 Hb_002534_100--Hb_002303_020 Hb_010578_080 Hb_010578_080 Hb_002534_100--Hb_010578_080 Hb_000292_100 Hb_000292_100 Hb_002534_100--Hb_000292_100 Hb_062226_130 Hb_062226_130 Hb_002534_100--Hb_062226_130 Hb_000310_020--Hb_000221_190 Hb_000161_130 Hb_000161_130 Hb_000310_020--Hb_000161_130 Hb_006615_240 Hb_006615_240 Hb_000310_020--Hb_006615_240 Hb_004324_090 Hb_004324_090 Hb_000310_020--Hb_004324_090 Hb_000310_020--Hb_003124_150 Hb_000840_200 Hb_000840_200 Hb_002303_020--Hb_000840_200 Hb_002303_020--Hb_004712_210 Hb_001728_040 Hb_001728_040 Hb_002303_020--Hb_001728_040 Hb_015675_040 Hb_015675_040 Hb_002303_020--Hb_015675_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1312 16.6405 32.3429 22.988 9.77417 13.7689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.7254 45.2389 20.0597 18.8851 27.5781

CAGE analysis