Hb_044653_050

Information

Type -
Description -
Location Contig44653: 48756-52341
Sequence    

Annotation

kegg
ID rcu:RCOM_0962830
description gd2b, putative
nr
ID XP_012065620.1
description PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
swissprot
ID Q869R1
description CTL-like protein DDB_G0274487 OS=Dictyostelium discoideum GN=DDB_G0274487 PE=3 SV=1
trembl
ID A0A067L539
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16873 PE=4 SV=1
Gene Ontology
ID GO:0016021
description ctl-like protein ddb_g0274487

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43067: 48764-52014
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044653_050 0.0 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
2 Hb_007130_020 0.0756212877 - - -
3 Hb_007894_120 0.080727792 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
4 Hb_017491_010 0.0811184664 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
5 Hb_004228_070 0.0873837544 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]
6 Hb_005365_010 0.0914306289 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
7 Hb_001301_260 0.0937125689 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
8 Hb_000260_410 0.0964141843 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
9 Hb_000173_270 0.0968782961 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
10 Hb_003454_050 0.0971764963 - - PREDICTED: probable methyltransferase PMT14 [Jatropha curcas]
11 Hb_002311_280 0.0980384115 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
12 Hb_001629_120 0.098315647 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
13 Hb_006922_020 0.0997553481 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
14 Hb_000199_040 0.1067252153 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
15 Hb_106089_010 0.1070742711 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
16 Hb_001352_030 0.1075538007 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
17 Hb_001143_120 0.1076064372 - - PREDICTED: uncharacterized protein LOC105638955 [Jatropha curcas]
18 Hb_070136_010 0.1078191179 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
19 Hb_000185_170 0.108087175 - - ATP binding protein, putative [Ricinus communis]
20 Hb_006970_170 0.1092590243 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_044653_050 Hb_044653_050 Hb_007130_020 Hb_007130_020 Hb_044653_050--Hb_007130_020 Hb_007894_120 Hb_007894_120 Hb_044653_050--Hb_007894_120 Hb_017491_010 Hb_017491_010 Hb_044653_050--Hb_017491_010 Hb_004228_070 Hb_004228_070 Hb_044653_050--Hb_004228_070 Hb_005365_010 Hb_005365_010 Hb_044653_050--Hb_005365_010 Hb_001301_260 Hb_001301_260 Hb_044653_050--Hb_001301_260 Hb_002311_280 Hb_002311_280 Hb_007130_020--Hb_002311_280 Hb_000836_090 Hb_000836_090 Hb_007130_020--Hb_000836_090 Hb_006922_020 Hb_006922_020 Hb_007130_020--Hb_006922_020 Hb_033006_020 Hb_033006_020 Hb_007130_020--Hb_033006_020 Hb_007130_020--Hb_004228_070 Hb_007894_120--Hb_017491_010 Hb_006970_170 Hb_006970_170 Hb_007894_120--Hb_006970_170 Hb_000500_230 Hb_000500_230 Hb_007894_120--Hb_000500_230 Hb_000260_480 Hb_000260_480 Hb_007894_120--Hb_000260_480 Hb_000010_370 Hb_000010_370 Hb_007894_120--Hb_000010_370 Hb_003071_050 Hb_003071_050 Hb_017491_010--Hb_003071_050 Hb_000260_410 Hb_000260_410 Hb_017491_010--Hb_000260_410 Hb_017491_010--Hb_000500_230 Hb_000818_090 Hb_000818_090 Hb_017491_010--Hb_000818_090 Hb_021576_130 Hb_021576_130 Hb_004228_070--Hb_021576_130 Hb_002205_150 Hb_002205_150 Hb_004228_070--Hb_002205_150 Hb_003454_050 Hb_003454_050 Hb_004228_070--Hb_003454_050 Hb_007123_010 Hb_007123_010 Hb_004228_070--Hb_007123_010 Hb_004228_070--Hb_006922_020 Hb_001629_120 Hb_001629_120 Hb_005365_010--Hb_001629_120 Hb_000173_270 Hb_000173_270 Hb_005365_010--Hb_000173_270 Hb_005365_010--Hb_000818_090 Hb_007270_020 Hb_007270_020 Hb_005365_010--Hb_007270_020 Hb_001417_060 Hb_001417_060 Hb_005365_010--Hb_001417_060 Hb_001606_010 Hb_001606_010 Hb_001301_260--Hb_001606_010 Hb_003531_050 Hb_003531_050 Hb_001301_260--Hb_003531_050 Hb_001352_030 Hb_001352_030 Hb_001301_260--Hb_001352_030 Hb_001301_260--Hb_001629_120 Hb_132356_010 Hb_132356_010 Hb_001301_260--Hb_132356_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.183277 22.4149 43.7438 33.2565 0.0991333 0.25588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.195628 0.513093 0.227234 8.75445 30.8981

CAGE analysis