Hb_044653_070

Information

Type -
Description -
Location Contig44653: 56538-61593
Sequence    

Annotation

kegg
ID cic:CICLE_v10018540mg
description hypothetical protein
nr
ID XP_006442021.1
description hypothetical protein CICLE_v10018540mg [Citrus clementina]
swissprot
ID F4KHI3
description Protein VARIATION IN COMPOUND TRIGGERED ROOT growth response OS=Arabidopsis thaliana GN=VICTR PE=1 SV=1
trembl
ID V4TZC4
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018540mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43069: 55828-56190
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044653_070 0.0 - - hypothetical protein CICLE_v10018540mg [Citrus clementina]
2 Hb_002518_100 0.1474168122 - - -
3 Hb_130589_010 0.1761830894 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
4 Hb_024677_010 0.1806136959 - - superoxide dismutase [fe], putative [Ricinus communis]
5 Hb_012799_190 0.1843825614 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
6 Hb_001348_090 0.1850277806 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
7 Hb_000951_120 0.1858786309 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
8 Hb_005914_210 0.1898411461 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
9 Hb_163145_030 0.192425162 - - PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Jatropha curcas]
10 Hb_002305_010 0.1927538479 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
11 Hb_000347_190 0.1937857337 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
12 Hb_001250_020 0.1940386734 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
13 Hb_002374_450 0.1978264285 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
14 Hb_000984_210 0.2002440669 - - PREDICTED: uncharacterized protein LOC104451821 [Eucalyptus grandis]
15 Hb_026314_030 0.2033347526 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
16 Hb_016760_010 0.2045396748 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_008616_040 0.204561823 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
18 Hb_001109_160 0.2057729472 - - DNA binding protein, putative [Ricinus communis]
19 Hb_000834_080 0.2061222232 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
20 Hb_003053_050 0.2061775333 - - PREDICTED: putative phospholipid-transporting ATPase 8 [Jatropha curcas]

Gene co-expression network

sample Hb_044653_070 Hb_044653_070 Hb_002518_100 Hb_002518_100 Hb_044653_070--Hb_002518_100 Hb_130589_010 Hb_130589_010 Hb_044653_070--Hb_130589_010 Hb_024677_010 Hb_024677_010 Hb_044653_070--Hb_024677_010 Hb_012799_190 Hb_012799_190 Hb_044653_070--Hb_012799_190 Hb_001348_090 Hb_001348_090 Hb_044653_070--Hb_001348_090 Hb_000951_120 Hb_000951_120 Hb_044653_070--Hb_000951_120 Hb_002085_050 Hb_002085_050 Hb_002518_100--Hb_002085_050 Hb_001365_010 Hb_001365_010 Hb_002518_100--Hb_001365_010 Hb_035834_010 Hb_035834_010 Hb_002518_100--Hb_035834_010 Hb_177343_010 Hb_177343_010 Hb_002518_100--Hb_177343_010 Hb_004710_020 Hb_004710_020 Hb_002518_100--Hb_004710_020 Hb_001009_260 Hb_001009_260 Hb_130589_010--Hb_001009_260 Hb_000120_860 Hb_000120_860 Hb_130589_010--Hb_000120_860 Hb_002150_020 Hb_002150_020 Hb_130589_010--Hb_002150_020 Hb_000684_390 Hb_000684_390 Hb_130589_010--Hb_000684_390 Hb_004735_020 Hb_004735_020 Hb_130589_010--Hb_004735_020 Hb_000920_310 Hb_000920_310 Hb_130589_010--Hb_000920_310 Hb_024677_010--Hb_001348_090 Hb_002374_450 Hb_002374_450 Hb_024677_010--Hb_002374_450 Hb_002005_040 Hb_002005_040 Hb_024677_010--Hb_002005_040 Hb_000516_080 Hb_000516_080 Hb_024677_010--Hb_000516_080 Hb_001250_020 Hb_001250_020 Hb_024677_010--Hb_001250_020 Hb_007765_130 Hb_007765_130 Hb_024677_010--Hb_007765_130 Hb_004242_170 Hb_004242_170 Hb_012799_190--Hb_004242_170 Hb_000834_080 Hb_000834_080 Hb_012799_190--Hb_000834_080 Hb_001053_020 Hb_001053_020 Hb_012799_190--Hb_001053_020 Hb_000336_200 Hb_000336_200 Hb_012799_190--Hb_000336_200 Hb_000976_130 Hb_000976_130 Hb_012799_190--Hb_000976_130 Hb_000762_110 Hb_000762_110 Hb_012799_190--Hb_000762_110 Hb_001348_090--Hb_002005_040 Hb_001348_090--Hb_002374_450 Hb_004055_160 Hb_004055_160 Hb_001348_090--Hb_004055_160 Hb_001348_090--Hb_004242_170 Hb_000441_050 Hb_000441_050 Hb_001348_090--Hb_000441_050 Hb_000951_120--Hb_002374_450 Hb_032631_070 Hb_032631_070 Hb_000951_120--Hb_032631_070 Hb_002075_030 Hb_002075_030 Hb_000951_120--Hb_002075_030 Hb_158092_100 Hb_158092_100 Hb_000951_120--Hb_158092_100 Hb_001649_030 Hb_001649_030 Hb_000951_120--Hb_001649_030 Hb_003752_090 Hb_003752_090 Hb_000951_120--Hb_003752_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00982734 0.058411 0.112131 0.138441 0.00919989 0.0807648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0351446 0.0333311 0.0419425 0.297176

CAGE analysis