Hb_044662_060

Information

Type -
Description -
Location Contig44662: 44123-51603
Sequence    

Annotation

kegg
ID rcu:RCOM_1032290
description long-chain-fatty-acid CoA ligase, putative (EC:6.2.1.3)
nr
ID XP_012078234.1
description PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
swissprot
ID Q9CAP8
description Long chain acyl-CoA synthetase 9, chloroplastic OS=Arabidopsis thaliana GN=LACS9 PE=2 SV=1
trembl
ID A0A067K9M7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12089 PE=4 SV=1
Gene Ontology
ID GO:0016020
description long chain acyl- synthetase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43084: 44014-51573 , PASA_asmbl_43085: 52167-58371
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044662_060 0.0 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
2 Hb_002498_140 0.09624824 - - PREDICTED: peroxisomal membrane protein PMP22-like isoform X1 [Solanum lycopersicum]
3 Hb_005463_130 0.1092242099 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
4 Hb_000365_100 0.1118564317 - - PREDICTED: probable galacturonosyltransferase 7 isoform X1 [Jatropha curcas]
5 Hb_001501_080 0.1149159929 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
6 Hb_000072_090 0.1173340814 - - PREDICTED: SEC14 cytosolic factor [Jatropha curcas]
7 Hb_001486_170 0.1194124942 - - PREDICTED: syntaxin-132 [Jatropha curcas]
8 Hb_000136_110 0.1196210774 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
9 Hb_000103_120 0.1202313739 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
10 Hb_002874_180 0.1223282834 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
11 Hb_000787_060 0.1239958469 - - thioredoxin domain-containing protein, putative [Ricinus communis]
12 Hb_013726_080 0.1245669753 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
13 Hb_006816_090 0.1249713443 - - PREDICTED: uncharacterized protein LOC105647425 isoform X2 [Jatropha curcas]
14 Hb_002351_030 0.1260666647 - - catalytic, putative [Ricinus communis]
15 Hb_011618_050 0.1261588051 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
16 Hb_000046_040 0.1279846481 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000007_390 0.1284479898 - - hypothetical protein JCGZ_18250 [Jatropha curcas]
18 Hb_000700_150 0.1286128061 - - conserved hypothetical protein [Ricinus communis]
19 Hb_143766_020 0.1290144751 - - putative phospholipase A2 [Gossypium arboreum]
20 Hb_077026_010 0.1296947384 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]

Gene co-expression network

sample Hb_044662_060 Hb_044662_060 Hb_002498_140 Hb_002498_140 Hb_044662_060--Hb_002498_140 Hb_005463_130 Hb_005463_130 Hb_044662_060--Hb_005463_130 Hb_000365_100 Hb_000365_100 Hb_044662_060--Hb_000365_100 Hb_001501_080 Hb_001501_080 Hb_044662_060--Hb_001501_080 Hb_000072_090 Hb_000072_090 Hb_044662_060--Hb_000072_090 Hb_001486_170 Hb_001486_170 Hb_044662_060--Hb_001486_170 Hb_000136_110 Hb_000136_110 Hb_002498_140--Hb_000136_110 Hb_010931_070 Hb_010931_070 Hb_002498_140--Hb_010931_070 Hb_000088_190 Hb_000088_190 Hb_002498_140--Hb_000088_190 Hb_001604_120 Hb_001604_120 Hb_002498_140--Hb_001604_120 Hb_000046_040 Hb_000046_040 Hb_002498_140--Hb_000046_040 Hb_005463_130--Hb_001486_170 Hb_002054_050 Hb_002054_050 Hb_005463_130--Hb_002054_050 Hb_005463_130--Hb_001501_080 Hb_013726_080 Hb_013726_080 Hb_005463_130--Hb_013726_080 Hb_000751_030 Hb_000751_030 Hb_005463_130--Hb_000751_030 Hb_008921_010 Hb_008921_010 Hb_005463_130--Hb_008921_010 Hb_000136_140 Hb_000136_140 Hb_000365_100--Hb_000136_140 Hb_000347_040 Hb_000347_040 Hb_000365_100--Hb_000347_040 Hb_000365_100--Hb_001604_120 Hb_000188_050 Hb_000188_050 Hb_000365_100--Hb_000188_050 Hb_000365_100--Hb_013726_080 Hb_000365_100--Hb_002498_140 Hb_001501_080--Hb_000751_030 Hb_001501_080--Hb_002054_050 Hb_000392_230 Hb_000392_230 Hb_001501_080--Hb_000392_230 Hb_007007_040 Hb_007007_040 Hb_001501_080--Hb_007007_040 Hb_003760_030 Hb_003760_030 Hb_001501_080--Hb_003760_030 Hb_006816_090 Hb_006816_090 Hb_000072_090--Hb_006816_090 Hb_000071_150 Hb_000071_150 Hb_000072_090--Hb_000071_150 Hb_000072_090--Hb_000136_110 Hb_171334_010 Hb_171334_010 Hb_000072_090--Hb_171334_010 Hb_001472_060 Hb_001472_060 Hb_000072_090--Hb_001472_060 Hb_001014_100 Hb_001014_100 Hb_000072_090--Hb_001014_100 Hb_002836_140 Hb_002836_140 Hb_001486_170--Hb_002836_140 Hb_001486_170--Hb_013726_080 Hb_001486_170--Hb_002054_050 Hb_000915_080 Hb_000915_080 Hb_001486_170--Hb_000915_080 Hb_008556_030 Hb_008556_030 Hb_001486_170--Hb_008556_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7973 3.13982 27.6056 16.8574 18.7023 13.4571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1938 6.69318 10.0803 6.61988 11.7128

CAGE analysis