Hb_044724_020

Information

Type -
Description -
Location Contig44724: 13129-14740
Sequence    

Annotation

kegg
ID egr:104455013
description probable LRR receptor-like serine/threonine-protein kinase At3g47570
nr
ID XP_011462111.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Fragaria vesca subsp. vesca]
swissprot
ID Q9C9Y8
description Probable inactive receptor kinase At3g08680 OS=Arabidopsis thaliana GN=At3g08680 PE=1 SV=1
trembl
ID A0A0E0CHT0
description Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1
Gene Ontology
ID GO:0016020
description receptor-like protein kinase at3g47110

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044724_020 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Fragaria vesca subsp. vesca]
2 Hb_000215_380 0.0111257775 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
3 Hb_106595_010 0.0118585947 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
4 Hb_007328_020 0.0124875521 - - -
5 Hb_000563_370 0.0132836389 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
6 Hb_128894_010 0.0271482519 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_007264_050 0.0301026113 - - -
8 Hb_064583_010 0.0403309749 - - PREDICTED: germin-like protein subfamily 1 member 7 [Vitis vinifera]
9 Hb_034558_010 0.0428800519 - - -
10 Hb_099085_010 0.0554219629 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
11 Hb_001766_090 0.0661511718 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
12 Hb_030312_060 0.0740568086 - - PREDICTED: uncharacterized protein LOC105634226 [Jatropha curcas]
13 Hb_007658_030 0.0812536106 - - PREDICTED: lupeol synthase-like isoform X1 [Populus euphratica]
14 Hb_030593_010 0.0862760811 - - hypothetical protein JCGZ_06063 [Jatropha curcas]
15 Hb_000484_050 0.0884568593 - - hypothetical protein CICLE_v10028549mg [Citrus clementina]
16 Hb_000016_290 0.0970439711 - - multidrug resistance pump, putative [Ricinus communis]
17 Hb_005050_010 0.0991405968 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
18 Hb_001796_010 0.1017243707 - - purine transporter, putative [Ricinus communis]
19 Hb_023827_010 0.1026339615 - - Cucumber peeling cupredoxin, putative [Ricinus communis]
20 Hb_011909_130 0.1060653916 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]

Gene co-expression network

sample Hb_044724_020 Hb_044724_020 Hb_000215_380 Hb_000215_380 Hb_044724_020--Hb_000215_380 Hb_106595_010 Hb_106595_010 Hb_044724_020--Hb_106595_010 Hb_007328_020 Hb_007328_020 Hb_044724_020--Hb_007328_020 Hb_000563_370 Hb_000563_370 Hb_044724_020--Hb_000563_370 Hb_128894_010 Hb_128894_010 Hb_044724_020--Hb_128894_010 Hb_007264_050 Hb_007264_050 Hb_044724_020--Hb_007264_050 Hb_000215_380--Hb_007328_020 Hb_000215_380--Hb_000563_370 Hb_000215_380--Hb_106595_010 Hb_000215_380--Hb_007264_050 Hb_064583_010 Hb_064583_010 Hb_000215_380--Hb_064583_010 Hb_106595_010--Hb_128894_010 Hb_106595_010--Hb_007328_020 Hb_106595_010--Hb_000563_370 Hb_034558_010 Hb_034558_010 Hb_106595_010--Hb_034558_010 Hb_007328_020--Hb_000563_370 Hb_007328_020--Hb_064583_010 Hb_007328_020--Hb_007264_050 Hb_000563_370--Hb_064583_010 Hb_000563_370--Hb_007264_050 Hb_128894_010--Hb_034558_010 Hb_128894_010--Hb_000215_380 Hb_128894_010--Hb_007328_020 Hb_128894_010--Hb_000563_370 Hb_007264_050--Hb_106595_010 Hb_007264_050--Hb_064583_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.90813 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.166199 0

CAGE analysis