Hb_044728_010

Information

Type -
Description -
Location Contig44728: 4958-7301
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43087: 4955-7567 , PASA_asmbl_43088: 4969-6298
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044728_010 0.0 - - -
2 Hb_009767_110 0.043923222 - - -
3 Hb_000107_330 0.0496928022 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Jatropha curcas]
4 Hb_000092_170 0.0546953052 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
5 Hb_000225_040 0.0616551599 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
6 Hb_001675_180 0.0637824654 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
7 Hb_010618_010 0.064143219 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
8 Hb_003525_010 0.0657377195 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
9 Hb_120327_010 0.0661136006 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
10 Hb_000028_480 0.0669719457 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
11 Hb_004221_020 0.0675614797 - - protein binding protein, putative [Ricinus communis]
12 Hb_001198_100 0.0694177888 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
13 Hb_000808_230 0.0697889141 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
14 Hb_002518_280 0.0702107014 - - phosphate transporter [Manihot esculenta]
15 Hb_008554_130 0.070254172 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105634317 [Jatropha curcas]
16 Hb_006649_050 0.0707173199 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
17 Hb_000011_200 0.0716744391 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
18 Hb_000085_050 0.072232892 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_000165_250 0.0722646207 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
20 Hb_007575_050 0.0727105693 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]

Gene co-expression network

sample Hb_044728_010 Hb_044728_010 Hb_009767_110 Hb_009767_110 Hb_044728_010--Hb_009767_110 Hb_000107_330 Hb_000107_330 Hb_044728_010--Hb_000107_330 Hb_000092_170 Hb_000092_170 Hb_044728_010--Hb_000092_170 Hb_000225_040 Hb_000225_040 Hb_044728_010--Hb_000225_040 Hb_001675_180 Hb_001675_180 Hb_044728_010--Hb_001675_180 Hb_010618_010 Hb_010618_010 Hb_044728_010--Hb_010618_010 Hb_006649_050 Hb_006649_050 Hb_009767_110--Hb_006649_050 Hb_001198_100 Hb_001198_100 Hb_009767_110--Hb_001198_100 Hb_002725_120 Hb_002725_120 Hb_009767_110--Hb_002725_120 Hb_008554_130 Hb_008554_130 Hb_009767_110--Hb_008554_130 Hb_000684_470 Hb_000684_470 Hb_009767_110--Hb_000684_470 Hb_000107_330--Hb_000092_170 Hb_000107_330--Hb_009767_110 Hb_000085_050 Hb_000085_050 Hb_000107_330--Hb_000085_050 Hb_003525_010 Hb_003525_010 Hb_000107_330--Hb_003525_010 Hb_000025_640 Hb_000025_640 Hb_000107_330--Hb_000025_640 Hb_000092_170--Hb_003525_010 Hb_011485_070 Hb_011485_070 Hb_000092_170--Hb_011485_070 Hb_002078_350 Hb_002078_350 Hb_000092_170--Hb_002078_350 Hb_000092_170--Hb_009767_110 Hb_000011_200 Hb_000011_200 Hb_000225_040--Hb_000011_200 Hb_003158_010 Hb_003158_010 Hb_000225_040--Hb_003158_010 Hb_167498_010 Hb_167498_010 Hb_000225_040--Hb_167498_010 Hb_000225_040--Hb_010618_010 Hb_000193_190 Hb_000193_190 Hb_000225_040--Hb_000193_190 Hb_000329_470 Hb_000329_470 Hb_000225_040--Hb_000329_470 Hb_000072_220 Hb_000072_220 Hb_001675_180--Hb_000072_220 Hb_000010_330 Hb_000010_330 Hb_001675_180--Hb_000010_330 Hb_001776_140 Hb_001776_140 Hb_001675_180--Hb_001776_140 Hb_008643_210 Hb_008643_210 Hb_001675_180--Hb_008643_210 Hb_000165_250 Hb_000165_250 Hb_001675_180--Hb_000165_250 Hb_001248_060 Hb_001248_060 Hb_010618_010--Hb_001248_060 Hb_001409_020 Hb_001409_020 Hb_010618_010--Hb_001409_020 Hb_015934_040 Hb_015934_040 Hb_010618_010--Hb_015934_040 Hb_002518_280 Hb_002518_280 Hb_010618_010--Hb_002518_280 Hb_011995_010 Hb_011995_010 Hb_010618_010--Hb_011995_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.1939 18.6447 12.4884 15.7097 27.7233 32.6953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.3686 30.5845 30.2154 22.6586 23.1187

CAGE analysis