Hb_045003_010

Information

Type -
Description -
Location Contig45003: 22318-23355
Sequence    

Annotation

kegg
ID rcu:RCOM_1536870
description Stomatin-1, putative
nr
ID XP_002519611.1
description Stomatin-1, putative [Ricinus communis]
swissprot
ID Q9UJZ1
description Stomatin-like protein 2, mitochondrial OS=Homo sapiens GN=STOML2 PE=1 SV=1
trembl
ID B9S0U2
description Stomatin-1, putative OS=Ricinus communis GN=RCOM_1536870 PE=4 SV=1
Gene Ontology
ID GO:0016020
description stomatin-like protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43166: 23979-24145
cDNA
(Sanger)
(ID:Location)		 006_H12.ab1: 21903-22577

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_045003_010 0.0 - - Stomatin-1, putative [Ricinus communis]
2 Hb_002042_150 0.0566498986 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
3 Hb_001353_010 0.0640877905 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
4 Hb_154948_040 0.0716934747 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
5 Hb_000566_120 0.0742334542 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
6 Hb_006326_040 0.0784796696 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002995_050 0.0785122692 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
8 Hb_000946_090 0.0817771948 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
9 Hb_000045_310 0.0823613249 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
10 Hb_028396_010 0.0837378598 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
11 Hb_001489_110 0.0845405855 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
12 Hb_000390_300 0.0849594645 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
13 Hb_000849_130 0.0853120754 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
14 Hb_004109_340 0.0864793394 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
15 Hb_001931_010 0.0871501606 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
16 Hb_001189_070 0.0882385135 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
17 Hb_006573_190 0.0883490301 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
18 Hb_002171_060 0.088753778 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000347_240 0.0888064972 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
20 Hb_000768_210 0.0897230658 - - PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]

Gene co-expression network

sample Hb_045003_010 Hb_045003_010 Hb_002042_150 Hb_002042_150 Hb_045003_010--Hb_002042_150 Hb_001353_010 Hb_001353_010 Hb_045003_010--Hb_001353_010 Hb_154948_040 Hb_154948_040 Hb_045003_010--Hb_154948_040 Hb_000566_120 Hb_000566_120 Hb_045003_010--Hb_000566_120 Hb_006326_040 Hb_006326_040 Hb_045003_010--Hb_006326_040 Hb_002995_050 Hb_002995_050 Hb_045003_010--Hb_002995_050 Hb_004109_340 Hb_004109_340 Hb_002042_150--Hb_004109_340 Hb_000179_270 Hb_000179_270 Hb_002042_150--Hb_000179_270 Hb_000384_070 Hb_000384_070 Hb_002042_150--Hb_000384_070 Hb_011344_120 Hb_011344_120 Hb_002042_150--Hb_011344_120 Hb_004108_220 Hb_004108_220 Hb_002042_150--Hb_004108_220 Hb_001489_110 Hb_001489_110 Hb_001353_010--Hb_001489_110 Hb_000808_190 Hb_000808_190 Hb_001353_010--Hb_000808_190 Hb_002303_060 Hb_002303_060 Hb_001353_010--Hb_002303_060 Hb_000563_200 Hb_000563_200 Hb_001353_010--Hb_000563_200 Hb_025098_010 Hb_025098_010 Hb_001353_010--Hb_025098_010 Hb_000002_380 Hb_000002_380 Hb_154948_040--Hb_000002_380 Hb_017895_040 Hb_017895_040 Hb_154948_040--Hb_017895_040 Hb_000390_300 Hb_000390_300 Hb_154948_040--Hb_000390_300 Hb_002105_100 Hb_002105_100 Hb_154948_040--Hb_002105_100 Hb_007878_010 Hb_007878_010 Hb_154948_040--Hb_007878_010 Hb_000045_310 Hb_000045_310 Hb_000566_120--Hb_000045_310 Hb_006573_190 Hb_006573_190 Hb_000566_120--Hb_006573_190 Hb_001931_010 Hb_001931_010 Hb_000566_120--Hb_001931_010 Hb_012799_170 Hb_012799_170 Hb_000566_120--Hb_012799_170 Hb_010361_010 Hb_010361_010 Hb_000566_120--Hb_010361_010 Hb_000566_120--Hb_000390_300 Hb_006326_040--Hb_001931_010 Hb_008071_020 Hb_008071_020 Hb_006326_040--Hb_008071_020 Hb_004889_020 Hb_004889_020 Hb_006326_040--Hb_004889_020 Hb_000505_130 Hb_000505_130 Hb_006326_040--Hb_000505_130 Hb_006326_040--Hb_000566_120 Hb_028396_010 Hb_028396_010 Hb_006326_040--Hb_028396_010 Hb_002995_050--Hb_001489_110 Hb_001269_190 Hb_001269_190 Hb_002995_050--Hb_001269_190 Hb_002995_050--Hb_000384_070 Hb_000087_070 Hb_000087_070 Hb_002995_050--Hb_000087_070 Hb_002995_050--Hb_001353_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.635 17.7704 40.141 74.385 23.6323 30.8928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.0119 81.3247 36.1838 36.1911 37.1373

CAGE analysis