Hb_045046_010

Information

Type transcription factor
Description TF Family: TUB
Location Contig45046: 547-3243
Sequence    

Annotation

kegg
ID pop:POPTR_0011s11070g
description POPTRDRAFT_771727; hypothetical protein
nr
ID XP_002316855.2
description hypothetical protein POPTR_0011s11070g [Populus trichocarpa]
swissprot
ID Q93VI8
description Tubby-like F-box protein 7 OS=Arabidopsis thaliana GN=TULP7 PE=2 SV=1
trembl
ID B9I1T1
description Tubby-like F-box protein OS=Populus trichocarpa GN=POPTR_0011s11070g PE=3 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43176: 1199-3178 , PASA_asmbl_43177: 1785-2199 , PASA_asmbl_43178: 2733-2990
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_045046_010 0.0 transcription factor TF Family: TUB hypothetical protein POPTR_0011s11070g [Populus trichocarpa]
2 Hb_063100_010 0.080173661 - - TATA box-binding protein-associated factor [Populus trichocarpa]
3 Hb_000336_140 0.0933237249 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002977_010 0.0933929786 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
5 Hb_003878_140 0.0953891239 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
6 Hb_003126_030 0.097248391 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002849_080 0.1130288282 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
8 Hb_010128_090 0.1137790441 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
9 Hb_001053_030 0.1210910412 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
10 Hb_000224_060 0.1212493034 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
11 Hb_001616_050 0.1212521577 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
12 Hb_017075_030 0.122023446 - - helicase, putative [Ricinus communis]
13 Hb_000465_310 0.1229197326 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006316_070 0.1235415656 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
15 Hb_173953_010 0.1240150657 - - hypothetical protein RCOM_1267370 [Ricinus communis]
16 Hb_001584_170 0.1257883306 - - neutral/alkaline invertase [Manihot esculenta]
17 Hb_002813_010 0.1261758679 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
18 Hb_001529_060 0.1273775506 - - PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Jatropha curcas]
19 Hb_003106_150 0.1299227741 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
20 Hb_043668_010 0.1319231115 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_045046_010 Hb_045046_010 Hb_063100_010 Hb_063100_010 Hb_045046_010--Hb_063100_010 Hb_000336_140 Hb_000336_140 Hb_045046_010--Hb_000336_140 Hb_002977_010 Hb_002977_010 Hb_045046_010--Hb_002977_010 Hb_003878_140 Hb_003878_140 Hb_045046_010--Hb_003878_140 Hb_003126_030 Hb_003126_030 Hb_045046_010--Hb_003126_030 Hb_002849_080 Hb_002849_080 Hb_045046_010--Hb_002849_080 Hb_063100_010--Hb_003878_140 Hb_000224_060 Hb_000224_060 Hb_063100_010--Hb_000224_060 Hb_001584_170 Hb_001584_170 Hb_063100_010--Hb_001584_170 Hb_063100_010--Hb_002977_010 Hb_000465_310 Hb_000465_310 Hb_063100_010--Hb_000465_310 Hb_000077_070 Hb_000077_070 Hb_000336_140--Hb_000077_070 Hb_000140_070 Hb_000140_070 Hb_000336_140--Hb_000140_070 Hb_000336_140--Hb_003126_030 Hb_000336_140--Hb_003878_140 Hb_002813_010 Hb_002813_010 Hb_000336_140--Hb_002813_010 Hb_002977_010--Hb_003878_140 Hb_032202_240 Hb_032202_240 Hb_002977_010--Hb_032202_240 Hb_006316_070 Hb_006316_070 Hb_002977_010--Hb_006316_070 Hb_001616_050 Hb_001616_050 Hb_002977_010--Hb_001616_050 Hb_002977_010--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_002977_010--Hb_148209_020 Hb_003878_140--Hb_000224_060 Hb_003878_140--Hb_001616_050 Hb_003878_140--Hb_001584_170 Hb_000865_080 Hb_000865_080 Hb_003878_140--Hb_000865_080 Hb_017075_030 Hb_017075_030 Hb_003878_140--Hb_017075_030 Hb_102129_070 Hb_102129_070 Hb_003126_030--Hb_102129_070 Hb_000140_080 Hb_000140_080 Hb_003126_030--Hb_000140_080 Hb_008554_120 Hb_008554_120 Hb_003126_030--Hb_008554_120 Hb_000152_340 Hb_000152_340 Hb_003126_030--Hb_000152_340 Hb_000406_240 Hb_000406_240 Hb_003126_030--Hb_000406_240 Hb_000169_130 Hb_000169_130 Hb_003126_030--Hb_000169_130 Hb_002849_080--Hb_148209_020 Hb_002849_080--Hb_006316_070 Hb_002609_010 Hb_002609_010 Hb_002849_080--Hb_002609_010 Hb_011465_030 Hb_011465_030 Hb_002849_080--Hb_011465_030 Hb_005038_020 Hb_005038_020 Hb_002849_080--Hb_005038_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.5676 31.4817 7.54631 2.01798 24.7585 17.8134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3109 10.379 12.1483 6.96787 3.01957

CAGE analysis