Hb_045370_010

Information

Type -
Description -
Location Contig45370: 2125-2364
Sequence    

Annotation

kegg
ID rcu:RCOM_0553920
description hypothetical protein
nr
ID XP_002525133.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8S8N1
description CLAVATA3/ESR (CLE)-related protein 7 OS=Arabidopsis thaliana GN=CLE7 PE=2 SV=1
trembl
ID B9SGL4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0553920 PE=4 SV=1
Gene Ontology
ID GO:0005576
description clavata3 esr -related protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_045370_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007547_050 0.214602112 - - Auxin response factor 9 [Aegilops tauschii]
3 Hb_003125_140 0.2295757784 - - PREDICTED: uncharacterized protein LOC105648796 [Jatropha curcas]
4 Hb_004097_020 0.2358007034 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002483_020 0.2553401895 - - -
6 Hb_140595_010 0.2559392707 - - -
7 Hb_005608_010 0.2593430596 - - PREDICTED: U-box domain-containing protein 40 [Jatropha curcas]
8 Hb_085375_010 0.2632437069 - - protein with unknown function [Ricinus communis]
9 Hb_007645_120 0.2643707134 - - hypothetical protein POPTR_0006s05370g [Populus trichocarpa]
10 Hb_002918_310 0.2690248977 - - PREDICTED: dnaJ protein homolog 1-like [Jatropha curcas]
11 Hb_006483_010 0.2742341566 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_002999_060 0.2748117747 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
13 Hb_000373_190 0.2761168132 - - -
14 Hb_000206_130 0.2828127866 - - unnamed protein product [Vitis vinifera]
15 Hb_003688_200 0.2831349586 - - conserved hypothetical protein [Ricinus communis]
16 Hb_097433_010 0.2840255098 - - PREDICTED: TPR repeat-containing thioredoxin TDX [Jatropha curcas]
17 Hb_001769_020 0.2853929947 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Jatropha curcas]
18 Hb_007382_020 0.2870757593 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
19 Hb_008406_120 0.2905065578 - - -
20 Hb_168978_040 0.2907019156 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]

Gene co-expression network

sample Hb_045370_010 Hb_045370_010 Hb_007547_050 Hb_007547_050 Hb_045370_010--Hb_007547_050 Hb_003125_140 Hb_003125_140 Hb_045370_010--Hb_003125_140 Hb_004097_020 Hb_004097_020 Hb_045370_010--Hb_004097_020 Hb_002483_020 Hb_002483_020 Hb_045370_010--Hb_002483_020 Hb_140595_010 Hb_140595_010 Hb_045370_010--Hb_140595_010 Hb_005608_010 Hb_005608_010 Hb_045370_010--Hb_005608_010 Hb_105427_010 Hb_105427_010 Hb_007547_050--Hb_105427_010 Hb_050686_010 Hb_050686_010 Hb_007547_050--Hb_050686_010 Hb_007547_050--Hb_004097_020 Hb_001329_260 Hb_001329_260 Hb_007547_050--Hb_001329_260 Hb_006483_010 Hb_006483_010 Hb_007547_050--Hb_006483_010 Hb_000580_130 Hb_000580_130 Hb_003125_140--Hb_000580_130 Hb_007645_120 Hb_007645_120 Hb_003125_140--Hb_007645_120 Hb_000120_570 Hb_000120_570 Hb_003125_140--Hb_000120_570 Hb_156144_030 Hb_156144_030 Hb_003125_140--Hb_156144_030 Hb_000265_220 Hb_000265_220 Hb_003125_140--Hb_000265_220 Hb_002965_030 Hb_002965_030 Hb_003125_140--Hb_002965_030 Hb_000140_150 Hb_000140_150 Hb_004097_020--Hb_000140_150 Hb_002918_310 Hb_002918_310 Hb_004097_020--Hb_002918_310 Hb_001946_360 Hb_001946_360 Hb_004097_020--Hb_001946_360 Hb_006631_010 Hb_006631_010 Hb_004097_020--Hb_006631_010 Hb_000173_210 Hb_000173_210 Hb_004097_020--Hb_000173_210 Hb_000619_070 Hb_000619_070 Hb_004097_020--Hb_000619_070 Hb_002483_020--Hb_140595_010 Hb_000062_380 Hb_000062_380 Hb_002483_020--Hb_000062_380 Hb_000318_260 Hb_000318_260 Hb_002483_020--Hb_000318_260 Hb_000088_030 Hb_000088_030 Hb_002483_020--Hb_000088_030 Hb_089140_080 Hb_089140_080 Hb_002483_020--Hb_089140_080 Hb_002483_020--Hb_006631_010 Hb_000544_120 Hb_000544_120 Hb_140595_010--Hb_000544_120 Hb_140595_010--Hb_000580_130 Hb_140595_010--Hb_006631_010 Hb_107847_010 Hb_107847_010 Hb_140595_010--Hb_107847_010 Hb_125861_010 Hb_125861_010 Hb_140595_010--Hb_125861_010 Hb_140595_010--Hb_000088_030 Hb_000260_370 Hb_000260_370 Hb_005608_010--Hb_000260_370 Hb_007192_060 Hb_007192_060 Hb_005608_010--Hb_007192_060 Hb_000062_030 Hb_000062_030 Hb_005608_010--Hb_000062_030 Hb_007044_010 Hb_007044_010 Hb_005608_010--Hb_007044_010 Hb_008616_030 Hb_008616_030 Hb_005608_010--Hb_008616_030 Hb_031527_070 Hb_031527_070 Hb_005608_010--Hb_031527_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.18691 1.35014 0.368507 1.45209 7.44048 0.68765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.71558 0.569263 0 0.803009 0

CAGE analysis