Hb_045502_010

Information

Type -
Description -
Location Contig45502: 2459-3375
Sequence    

Annotation

kegg
ID rcu:RCOM_1237470
description Prefoldin subunit, putative
nr
ID NP_001295708.1
description prefoldin subunit 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID D6BR52
description Prefoldin-related KE2-like protein OS=Jatropha curcas PE=2 SV=1
Gene Ontology
ID GO:0016272
description prefoldin subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43413: 2410-3695
cDNA
(Sanger)
(ID:Location)		 024_O01.ab1: 2424-3693

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_045502_010 0.0 - - prefoldin subunit 1 [Jatropha curcas]
2 Hb_000619_070 0.0995896649 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
3 Hb_035360_010 0.1000382621 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
4 Hb_000038_150 0.1117750597 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
5 Hb_003581_110 0.1128599486 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
6 Hb_003673_020 0.1173918013 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
7 Hb_000392_280 0.1312552929 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
8 Hb_000544_120 0.1322544806 - - PREDICTED: thymidylate kinase [Jatropha curcas]
9 Hb_000173_210 0.1334858664 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
10 Hb_019871_020 0.1337068588 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
11 Hb_007111_040 0.1394881881 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
12 Hb_003226_170 0.1405344059 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
13 Hb_002405_020 0.14112552 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
14 Hb_000779_040 0.1462815066 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
15 Hb_000608_340 0.1506287262 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
16 Hb_000808_060 0.1511843795 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
17 Hb_099698_010 0.1517091562 - - -
18 Hb_002903_120 0.1532061395 - - -
19 Hb_000185_090 0.1538287107 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
20 Hb_004206_040 0.1560792273 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_045502_010 Hb_045502_010 Hb_000619_070 Hb_000619_070 Hb_045502_010--Hb_000619_070 Hb_035360_010 Hb_035360_010 Hb_045502_010--Hb_035360_010 Hb_000038_150 Hb_000038_150 Hb_045502_010--Hb_000038_150 Hb_003581_110 Hb_003581_110 Hb_045502_010--Hb_003581_110 Hb_003673_020 Hb_003673_020 Hb_045502_010--Hb_003673_020 Hb_000392_280 Hb_000392_280 Hb_045502_010--Hb_000392_280 Hb_000619_070--Hb_035360_010 Hb_000608_340 Hb_000608_340 Hb_000619_070--Hb_000608_340 Hb_000779_040 Hb_000779_040 Hb_000619_070--Hb_000779_040 Hb_000619_070--Hb_003673_020 Hb_019871_020 Hb_019871_020 Hb_000619_070--Hb_019871_020 Hb_035360_010--Hb_003673_020 Hb_000792_110 Hb_000792_110 Hb_035360_010--Hb_000792_110 Hb_035360_010--Hb_000779_040 Hb_035360_010--Hb_000608_340 Hb_000211_090 Hb_000211_090 Hb_035360_010--Hb_000211_090 Hb_001159_210 Hb_001159_210 Hb_000038_150--Hb_001159_210 Hb_134732_010 Hb_134732_010 Hb_000038_150--Hb_134732_010 Hb_000038_150--Hb_035360_010 Hb_000038_150--Hb_000619_070 Hb_004460_020 Hb_004460_020 Hb_000038_150--Hb_004460_020 Hb_001016_060 Hb_001016_060 Hb_003581_110--Hb_001016_060 Hb_003581_110--Hb_000392_280 Hb_009801_010 Hb_009801_010 Hb_003581_110--Hb_009801_010 Hb_179511_010 Hb_179511_010 Hb_003581_110--Hb_179511_010 Hb_002405_020 Hb_002405_020 Hb_003581_110--Hb_002405_020 Hb_003673_020--Hb_000779_040 Hb_003673_020--Hb_000211_090 Hb_000211_080 Hb_000211_080 Hb_003673_020--Hb_000211_080 Hb_003666_050 Hb_003666_050 Hb_003673_020--Hb_003666_050 Hb_000363_340 Hb_000363_340 Hb_000392_280--Hb_000363_340 Hb_000173_210 Hb_000173_210 Hb_000392_280--Hb_000173_210 Hb_000300_540 Hb_000300_540 Hb_000392_280--Hb_000300_540 Hb_002025_140 Hb_002025_140 Hb_000392_280--Hb_002025_140 Hb_000392_280--Hb_019871_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.4282 7.57265 6.23422 5.8778 78.6524 55.9653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.43692 12.5179 4.8905 5.61481 0.673443

CAGE analysis