Hb_045770_010

Information

Type -
Description -
Location Contig45770: 828-2088
Sequence    

Annotation

kegg
ID pop:POPTR_0011s10540g
description ER lumen protein retaining receptor
nr
ID XP_006377720.1
description ER lumen protein retaining receptor [Populus trichocarpa]
swissprot
ID Q8VWI1
description ER lumen protein-retaining receptor B OS=Arabidopsis thaliana GN=ERD2B PE=1 SV=1
trembl
ID U5G221
description ER lumen protein-retaining receptor OS=Populus trichocarpa GN=POPTR_0011s10540g PE=3 SV=1
Gene Ontology
ID GO:0005789
description er lumen protein-retaining receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_045770_010 0.0 - - ER lumen protein retaining receptor [Populus trichocarpa]
2 Hb_002660_150 0.1098319221 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
3 Hb_169631_010 0.1104288022 - - MADS-box transcription factor, putative [Ricinus communis]
4 Hb_000022_200 0.1171506489 - - PREDICTED: uncharacterized protein LOC105638292 [Jatropha curcas]
5 Hb_009049_020 0.1196424215 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
6 Hb_000170_200 0.1202075671 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
7 Hb_008120_010 0.1205416522 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
8 Hb_000331_370 0.1247071546 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
9 Hb_000107_080 0.1265843919 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
10 Hb_003669_010 0.1285978241 - - PREDICTED: psbP domain-containing protein 5, chloroplastic [Populus euphratica]
11 Hb_002900_080 0.137745501 - - PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Jatropha curcas]
12 Hb_004157_100 0.1406133549 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
13 Hb_003688_090 0.1415535764 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
14 Hb_007017_080 0.1419605345 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
15 Hb_011671_040 0.1420108601 - - PREDICTED: uncharacterized protein LOC105646469 isoform X2 [Jatropha curcas]
16 Hb_002518_030 0.1436619837 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 3 isoform X1 [Populus euphratica]
17 Hb_000261_330 0.1482025073 - - PREDICTED: ER lumen protein-retaining receptor [Amborella trichopoda]
18 Hb_003929_270 0.149130308 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
19 Hb_000445_050 0.1493479027 - - PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]
20 Hb_002828_020 0.1510389024 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_045770_010 Hb_045770_010 Hb_002660_150 Hb_002660_150 Hb_045770_010--Hb_002660_150 Hb_169631_010 Hb_169631_010 Hb_045770_010--Hb_169631_010 Hb_000022_200 Hb_000022_200 Hb_045770_010--Hb_000022_200 Hb_009049_020 Hb_009049_020 Hb_045770_010--Hb_009049_020 Hb_000170_200 Hb_000170_200 Hb_045770_010--Hb_000170_200 Hb_008120_010 Hb_008120_010 Hb_045770_010--Hb_008120_010 Hb_000331_370 Hb_000331_370 Hb_002660_150--Hb_000331_370 Hb_052805_010 Hb_052805_010 Hb_002660_150--Hb_052805_010 Hb_002660_150--Hb_169631_010 Hb_000172_510 Hb_000172_510 Hb_002660_150--Hb_000172_510 Hb_004032_030 Hb_004032_030 Hb_002660_150--Hb_004032_030 Hb_010407_140 Hb_010407_140 Hb_002660_150--Hb_010407_140 Hb_004157_100 Hb_004157_100 Hb_169631_010--Hb_004157_100 Hb_000249_070 Hb_000249_070 Hb_169631_010--Hb_000249_070 Hb_000107_230 Hb_000107_230 Hb_169631_010--Hb_000107_230 Hb_004052_040 Hb_004052_040 Hb_169631_010--Hb_004052_040 Hb_169631_010--Hb_009049_020 Hb_000261_330 Hb_000261_330 Hb_000022_200--Hb_000261_330 Hb_002900_080 Hb_002900_080 Hb_000022_200--Hb_002900_080 Hb_002485_030 Hb_002485_030 Hb_000022_200--Hb_002485_030 Hb_001085_260 Hb_001085_260 Hb_000022_200--Hb_001085_260 Hb_007904_210 Hb_007904_210 Hb_000022_200--Hb_007904_210 Hb_000208_260 Hb_000208_260 Hb_009049_020--Hb_000208_260 Hb_002398_030 Hb_002398_030 Hb_009049_020--Hb_002398_030 Hb_000445_050 Hb_000445_050 Hb_009049_020--Hb_000445_050 Hb_009049_020--Hb_008120_010 Hb_058999_030 Hb_058999_030 Hb_009049_020--Hb_058999_030 Hb_003688_090 Hb_003688_090 Hb_009049_020--Hb_003688_090 Hb_002518_030 Hb_002518_030 Hb_000170_200--Hb_002518_030 Hb_011671_040 Hb_011671_040 Hb_000170_200--Hb_011671_040 Hb_000110_310 Hb_000110_310 Hb_000170_200--Hb_000110_310 Hb_008748_040 Hb_008748_040 Hb_000170_200--Hb_008748_040 Hb_003688_130 Hb_003688_130 Hb_000170_200--Hb_003688_130 Hb_000579_120 Hb_000579_120 Hb_000170_200--Hb_000579_120 Hb_008120_010--Hb_011671_040 Hb_000107_200 Hb_000107_200 Hb_008120_010--Hb_000107_200 Hb_002828_020 Hb_002828_020 Hb_008120_010--Hb_002828_020 Hb_002445_120 Hb_002445_120 Hb_008120_010--Hb_002445_120 Hb_007403_060 Hb_007403_060 Hb_008120_010--Hb_007403_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.634 1.70588 10.0012 18.0899 6.49545 11.323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2217 3.54402 5.45673 5.04399 4.76518

CAGE analysis