Hb_045793_010

Information

Type -
Description -
Location Contig45793: 3-954
Sequence    

Annotation

kegg
ID pxb:103954944
description putative disease resistance protein RGA3
nr
ID XP_009365073.1
description PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
swissprot
ID Q9LRR5
description Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1
trembl
ID V4TZA7
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018531mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_045793_010 0.0 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
2 Hb_000025_360 0.0537793801 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
3 Hb_000827_070 0.05735589 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
4 Hb_076693_020 0.0622282395 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
5 Hb_006847_040 0.0678256997 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]
6 Hb_001021_170 0.0685564696 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
7 Hb_000174_220 0.0685925067 - - cohesin subunit rad21, putative [Ricinus communis]
8 Hb_005188_050 0.0715443335 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
9 Hb_023827_040 0.0718443494 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
10 Hb_015807_070 0.0763373141 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
11 Hb_031527_020 0.0764622469 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
12 Hb_000139_090 0.0773660964 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
13 Hb_003609_030 0.0775193527 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
14 Hb_000002_040 0.0776982176 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
15 Hb_000487_290 0.0794991955 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
16 Hb_001718_090 0.0812521898 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
17 Hb_000229_020 0.0815563954 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03540 [Jatropha curcas]
18 Hb_000768_040 0.0821650209 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
19 Hb_003785_040 0.0822879925 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
20 Hb_011491_010 0.0823579709 - - Protein YME1, putative [Ricinus communis]

Gene co-expression network

sample Hb_045793_010 Hb_045793_010 Hb_000025_360 Hb_000025_360 Hb_045793_010--Hb_000025_360 Hb_000827_070 Hb_000827_070 Hb_045793_010--Hb_000827_070 Hb_076693_020 Hb_076693_020 Hb_045793_010--Hb_076693_020 Hb_006847_040 Hb_006847_040 Hb_045793_010--Hb_006847_040 Hb_001021_170 Hb_001021_170 Hb_045793_010--Hb_001021_170 Hb_000174_220 Hb_000174_220 Hb_045793_010--Hb_000174_220 Hb_002188_110 Hb_002188_110 Hb_000025_360--Hb_002188_110 Hb_000046_010 Hb_000046_010 Hb_000025_360--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000025_360--Hb_001718_090 Hb_183963_030 Hb_183963_030 Hb_000025_360--Hb_183963_030 Hb_000107_500 Hb_000107_500 Hb_000025_360--Hb_000107_500 Hb_005188_050 Hb_005188_050 Hb_000827_070--Hb_005188_050 Hb_000487_290 Hb_000487_290 Hb_000827_070--Hb_000487_290 Hb_002477_030 Hb_002477_030 Hb_000827_070--Hb_002477_030 Hb_120327_010 Hb_120327_010 Hb_000827_070--Hb_120327_010 Hb_001736_040 Hb_001736_040 Hb_000827_070--Hb_001736_040 Hb_000322_150 Hb_000322_150 Hb_076693_020--Hb_000322_150 Hb_000441_070 Hb_000441_070 Hb_076693_020--Hb_000441_070 Hb_023827_040 Hb_023827_040 Hb_076693_020--Hb_023827_040 Hb_076693_020--Hb_000025_360 Hb_076693_020--Hb_006847_040 Hb_006847_040--Hb_001021_170 Hb_006847_040--Hb_000025_360 Hb_006847_040--Hb_000174_220 Hb_015807_070 Hb_015807_070 Hb_006847_040--Hb_015807_070 Hb_001021_170--Hb_015807_070 Hb_004355_020 Hb_004355_020 Hb_001021_170--Hb_004355_020 Hb_000768_040 Hb_000768_040 Hb_001021_170--Hb_000768_040 Hb_007416_180 Hb_007416_180 Hb_001021_170--Hb_007416_180 Hb_000139_090 Hb_000139_090 Hb_000174_220--Hb_000139_090 Hb_000174_220--Hb_015807_070 Hb_002235_300 Hb_002235_300 Hb_000174_220--Hb_002235_300 Hb_003785_040 Hb_003785_040 Hb_000174_220--Hb_003785_040 Hb_001247_070 Hb_001247_070 Hb_000174_220--Hb_001247_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.0234 5.82379 1.82186 1.66035 4.63607 5.34
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.42525 3.91082 3.65833 2.37438 2.40746

CAGE analysis