Hb_045985_010

Information

Type -
Description -
Location Contig45985: 22-1620
Sequence    

Annotation

kegg
ID rcu:RCOM_0497320
description DNA (cytosine-5)-methyltransferase, putative (EC:2.3.1.97)
nr
ID KDP42494.1
description hypothetical protein JCGZ_00291 [Jatropha curcas]
swissprot
ID Q7Y1I7
description DNA (cytosine-5)-methyltransferase 1A OS=Oryza sativa subsp. japonica GN=MET1A PE=2 SV=1
trembl
ID A0A067LEH5
description Cytosine-specific methyltransferase OS=Jatropha curcas GN=JCGZ_00291 PE=3 SV=1
Gene Ontology
ID GO:0005488
description dna (cytosine-5)-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_045985_010 0.0 - - hypothetical protein JCGZ_00291 [Jatropha curcas]
2 Hb_000988_010 0.0983281031 - - hypothetical protein POPTR_0004s17730g [Populus trichocarpa]
3 Hb_001862_080 0.1106528623 - - hypothetical protein RCOM_1154950 [Ricinus communis]
4 Hb_006615_110 0.1184954981 transcription factor TF Family: bZIP hypothetical protein JCGZ_11777 [Jatropha curcas]
5 Hb_187739_010 0.1692333982 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
6 Hb_002805_100 0.1792396333 - - Receptor-like protein 12 [Morus notabilis]
7 Hb_002675_210 0.1852072419 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
8 Hb_019733_020 0.2128239436 - - hypothetical protein POPTR_0003s15470g [Populus trichocarpa]
9 Hb_093385_010 0.224554346 - - PREDICTED: probable mannitol dehydrogenase [Pyrus x bretschneideri]
10 Hb_011120_030 0.2305007569 - - PREDICTED: uncharacterized protein LOC105638239 [Jatropha curcas]
11 Hb_007125_020 0.2468472032 - - hypothetical protein POPTR_0003s18010g [Populus trichocarpa]
12 Hb_071433_010 0.2579307674 - - lipid binding protein, putative [Ricinus communis]
13 Hb_002217_410 0.2588671351 - - hypothetical protein L484_027883 [Morus notabilis]
14 Hb_008196_010 0.2612146194 - - unnamed protein product [Coffea canephora]
15 Hb_115445_010 0.263919141 - - -
16 Hb_000406_010 0.2661377088 - - PREDICTED: uncharacterized protein LOC105647846 [Jatropha curcas]
17 Hb_000104_070 0.2667672865 - - PREDICTED: citrate-binding protein-like [Jatropha curcas]
18 Hb_001518_050 0.268084686 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
19 Hb_071116_010 0.2694052254 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
20 Hb_000039_080 0.2694696692 - - cyclin d, putative [Ricinus communis]

Gene co-expression network

sample Hb_045985_010 Hb_045985_010 Hb_000988_010 Hb_000988_010 Hb_045985_010--Hb_000988_010 Hb_001862_080 Hb_001862_080 Hb_045985_010--Hb_001862_080 Hb_006615_110 Hb_006615_110 Hb_045985_010--Hb_006615_110 Hb_187739_010 Hb_187739_010 Hb_045985_010--Hb_187739_010 Hb_002805_100 Hb_002805_100 Hb_045985_010--Hb_002805_100 Hb_002675_210 Hb_002675_210 Hb_045985_010--Hb_002675_210 Hb_000988_010--Hb_006615_110 Hb_000988_010--Hb_187739_010 Hb_019733_020 Hb_019733_020 Hb_000988_010--Hb_019733_020 Hb_000988_010--Hb_002675_210 Hb_001518_050 Hb_001518_050 Hb_000988_010--Hb_001518_050 Hb_001862_080--Hb_000988_010 Hb_002217_410 Hb_002217_410 Hb_001862_080--Hb_002217_410 Hb_001862_080--Hb_002805_100 Hb_001862_080--Hb_006615_110 Hb_001862_080--Hb_002675_210 Hb_007125_020 Hb_007125_020 Hb_006615_110--Hb_007125_020 Hb_008196_010 Hb_008196_010 Hb_006615_110--Hb_008196_010 Hb_006615_110--Hb_019733_020 Hb_006615_110--Hb_187739_010 Hb_172983_010 Hb_172983_010 Hb_187739_010--Hb_172983_010 Hb_002163_070 Hb_002163_070 Hb_187739_010--Hb_002163_070 Hb_010252_010 Hb_010252_010 Hb_187739_010--Hb_010252_010 Hb_009083_020 Hb_009083_020 Hb_187739_010--Hb_009083_020 Hb_160950_010 Hb_160950_010 Hb_187739_010--Hb_160950_010 Hb_002805_100--Hb_002675_210 Hb_002805_100--Hb_000988_010 Hb_002805_100--Hb_019733_020 Hb_011120_030 Hb_011120_030 Hb_002805_100--Hb_011120_030 Hb_115445_010 Hb_115445_010 Hb_002805_100--Hb_115445_010 Hb_002675_210--Hb_019733_020 Hb_002675_210--Hb_006615_110 Hb_002675_210--Hb_011120_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0293315 0.0542904 0.127288 0.0326895 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis