Hb_046054_010

Information

Type -
Description -
Location Contig46054: 977-2338
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012092674.1
description PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_046054_010 0.0 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
2 Hb_035687_010 0.3197984428 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_001106_050 0.3315814296 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_001817_030 0.3365663061 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
5 Hb_000094_040 0.3502050721 - - -
6 Hb_170156_010 0.3519498574 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_003206_080 0.3630398578 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
8 Hb_008511_010 0.3637660249 - - PREDICTED: putative proline-rich receptor-like protein kinase PERK6 [Jatropha curcas]
9 Hb_000101_150 0.3648797309 - - -
10 Hb_138652_010 0.3679988871 - - hypothetical protein JCGZ_13474 [Jatropha curcas]
11 Hb_001221_370 0.3693299417 - - hypothetical protein MIMGU_mgv1a020064mg, partial [Erythranthe guttata]
12 Hb_003349_100 0.3704371187 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000251_090 0.3752011706 - - PREDICTED: two-pore potassium channel 3-like [Jatropha curcas]
14 Hb_146339_010 0.3787524418 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
15 Hb_000475_050 0.3797209674 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_001976_080 0.3834550784 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
17 Hb_010366_010 0.3860351791 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
18 Hb_001545_210 0.3865222472 - - hypothetical protein JCGZ_11132 [Jatropha curcas]
19 Hb_052689_010 0.3865541535 - - heat shock cognate protein [Solanum commersonii]
20 Hb_055101_010 0.3896587736 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_046054_010 Hb_046054_010 Hb_035687_010 Hb_035687_010 Hb_046054_010--Hb_035687_010 Hb_001106_050 Hb_001106_050 Hb_046054_010--Hb_001106_050 Hb_001817_030 Hb_001817_030 Hb_046054_010--Hb_001817_030 Hb_000094_040 Hb_000094_040 Hb_046054_010--Hb_000094_040 Hb_170156_010 Hb_170156_010 Hb_046054_010--Hb_170156_010 Hb_003206_080 Hb_003206_080 Hb_046054_010--Hb_003206_080 Hb_001221_370 Hb_001221_370 Hb_035687_010--Hb_001221_370 Hb_004212_040 Hb_004212_040 Hb_035687_010--Hb_004212_040 Hb_000205_340 Hb_000205_340 Hb_035687_010--Hb_000205_340 Hb_002571_090 Hb_002571_090 Hb_035687_010--Hb_002571_090 Hb_035687_010--Hb_003206_080 Hb_143874_010 Hb_143874_010 Hb_035687_010--Hb_143874_010 Hb_003881_050 Hb_003881_050 Hb_001106_050--Hb_003881_050 Hb_052689_010 Hb_052689_010 Hb_001106_050--Hb_052689_010 Hb_055101_010 Hb_055101_010 Hb_001106_050--Hb_055101_010 Hb_000251_090 Hb_000251_090 Hb_001106_050--Hb_000251_090 Hb_003688_160 Hb_003688_160 Hb_001106_050--Hb_003688_160 Hb_001242_090 Hb_001242_090 Hb_001106_050--Hb_001242_090 Hb_003436_030 Hb_003436_030 Hb_001817_030--Hb_003436_030 Hb_012586_030 Hb_012586_030 Hb_001817_030--Hb_012586_030 Hb_177179_010 Hb_177179_010 Hb_001817_030--Hb_177179_010 Hb_001817_030--Hb_035687_010 Hb_002289_130 Hb_002289_130 Hb_001817_030--Hb_002289_130 Hb_000078_090 Hb_000078_090 Hb_000094_040--Hb_000078_090 Hb_113673_010 Hb_113673_010 Hb_000094_040--Hb_113673_010 Hb_000618_090 Hb_000618_090 Hb_000094_040--Hb_000618_090 Hb_063943_010 Hb_063943_010 Hb_000094_040--Hb_063943_010 Hb_010521_030 Hb_010521_030 Hb_000094_040--Hb_010521_030 Hb_001393_010 Hb_001393_010 Hb_000094_040--Hb_001393_010 Hb_002791_020 Hb_002791_020 Hb_170156_010--Hb_002791_020 Hb_000101_150 Hb_000101_150 Hb_170156_010--Hb_000101_150 Hb_170559_010 Hb_170559_010 Hb_170156_010--Hb_170559_010 Hb_000159_020 Hb_000159_020 Hb_170156_010--Hb_000159_020 Hb_003406_030 Hb_003406_030 Hb_170156_010--Hb_003406_030 Hb_151320_010 Hb_151320_010 Hb_170156_010--Hb_151320_010 Hb_003349_100 Hb_003349_100 Hb_003206_080--Hb_003349_100 Hb_005896_010 Hb_005896_010 Hb_003206_080--Hb_005896_010 Hb_003097_050 Hb_003097_050 Hb_003206_080--Hb_003097_050 Hb_038044_020 Hb_038044_020 Hb_003206_080--Hb_038044_020 Hb_003206_080--Hb_001221_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0595225 0.0883448 0 0 0.0495249 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.173755 0.0192526 0.0964701

CAGE analysis