Hb_046120_010

Information

Type -
Description -
Location Contig46120: 753-872
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_046120_010 0.0 - - -
2 Hb_000082_020 0.1515699447 - - -
3 Hb_041025_010 0.1598711482 - - PREDICTED: uncharacterized protein LOC105635593 [Jatropha curcas]
4 Hb_114079_010 0.1998719883 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
5 Hb_001252_200 0.2021227315 - - PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
6 Hb_000084_130 0.206775519 - - -
7 Hb_032258_020 0.2127584711 - - PREDICTED: amidase 1-like isoform X2 [Malus domestica]
8 Hb_003030_040 0.2150094368 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
9 Hb_007083_020 0.216381532 - - hypothetical protein F775_15403 [Aegilops tauschii]
10 Hb_000003_180 0.2219807187 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005318_020 0.2219871744 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
12 Hb_068014_010 0.2221573491 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
13 Hb_060458_010 0.2222194955 - - conserved hypothetical protein [Ricinus communis]
14 Hb_031866_050 0.2291997628 - - PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
15 Hb_000066_180 0.2294238922 - - hypothetical protein POPTR_0008s02710g [Populus trichocarpa]
16 Hb_033385_010 0.2318245054 - - hypothetical protein JCGZ_06094 [Jatropha curcas]
17 Hb_000053_050 0.2322867923 - - hypothetical protein F775_01878 [Aegilops tauschii]
18 Hb_169505_010 0.2326663904 - - hypothetical protein JCGZ_04480 [Jatropha curcas]
19 Hb_177103_010 0.2335552448 - - PREDICTED: histone H2AX [Elaeis guineensis]
20 Hb_001907_090 0.234230658 - - -

Gene co-expression network

sample Hb_046120_010 Hb_046120_010 Hb_000082_020 Hb_000082_020 Hb_046120_010--Hb_000082_020 Hb_041025_010 Hb_041025_010 Hb_046120_010--Hb_041025_010 Hb_114079_010 Hb_114079_010 Hb_046120_010--Hb_114079_010 Hb_001252_200 Hb_001252_200 Hb_046120_010--Hb_001252_200 Hb_000084_130 Hb_000084_130 Hb_046120_010--Hb_000084_130 Hb_032258_020 Hb_032258_020 Hb_046120_010--Hb_032258_020 Hb_000082_020--Hb_041025_010 Hb_000082_020--Hb_114079_010 Hb_007083_020 Hb_007083_020 Hb_000082_020--Hb_007083_020 Hb_183522_010 Hb_183522_010 Hb_000082_020--Hb_183522_010 Hb_106415_010 Hb_106415_010 Hb_000082_020--Hb_106415_010 Hb_041025_010--Hb_114079_010 Hb_041025_010--Hb_183522_010 Hb_010964_020 Hb_010964_020 Hb_041025_010--Hb_010964_020 Hb_169505_010 Hb_169505_010 Hb_041025_010--Hb_169505_010 Hb_114079_010--Hb_183522_010 Hb_003030_040 Hb_003030_040 Hb_114079_010--Hb_003030_040 Hb_025905_020 Hb_025905_020 Hb_114079_010--Hb_025905_020 Hb_114079_010--Hb_010964_020 Hb_001005_150 Hb_001005_150 Hb_001252_200--Hb_001005_150 Hb_001252_200--Hb_106415_010 Hb_001252_200--Hb_007083_020 Hb_051424_010 Hb_051424_010 Hb_001252_200--Hb_051424_010 Hb_013691_010 Hb_013691_010 Hb_001252_200--Hb_013691_010 Hb_000087_030 Hb_000087_030 Hb_001252_200--Hb_000087_030 Hb_008096_020 Hb_008096_020 Hb_000084_130--Hb_008096_020 Hb_005318_020 Hb_005318_020 Hb_000084_130--Hb_005318_020 Hb_003656_150 Hb_003656_150 Hb_000084_130--Hb_003656_150 Hb_007083_050 Hb_007083_050 Hb_000084_130--Hb_007083_050 Hb_006995_010 Hb_006995_010 Hb_000084_130--Hb_006995_010 Hb_177103_010 Hb_177103_010 Hb_000084_130--Hb_177103_010 Hb_002815_050 Hb_002815_050 Hb_032258_020--Hb_002815_050 Hb_000181_150 Hb_000181_150 Hb_032258_020--Hb_000181_150 Hb_022891_010 Hb_022891_010 Hb_032258_020--Hb_022891_010 Hb_032258_020--Hb_003030_040 Hb_007188_030 Hb_007188_030 Hb_032258_020--Hb_007188_030 Hb_032258_020--Hb_177103_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
177.803 326.348 368.601 1357.48 62.4313 3198.31
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
139.446 127.819 0 345.179 253.515

CAGE analysis