Hb_046191_010

Information

Type -
Description -
Location Contig46191: 2-1042
Sequence    

Annotation

kegg
ID rcu:RCOM_0911280
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002517082.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9LUI1
description Leucine-rich repeat extensin-like protein 6 OS=Arabidopsis thaliana GN=LRX6 PE=2 SV=1
trembl
ID B9RTL3
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0911280 PE=4 SV=1
Gene Ontology
ID GO:0016301
description leucine-rich repeat extensin-like protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_046191_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_014115_010 0.0554467084 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_002499_020 0.0792957554 - - hevamine-A precursor, putative [Ricinus communis]
4 Hb_010571_010 0.0824119499 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
5 Hb_003469_030 0.0837281476 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
6 Hb_005056_030 0.0940819757 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
7 Hb_006120_010 0.0969563388 - - invertase inhibitor [Manihot esculenta]
8 Hb_000761_030 0.1288890539 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
9 Hb_000306_050 0.1291667987 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
10 Hb_000081_030 0.1299117427 - - BnaC09g05810D [Brassica napus]
11 Hb_007181_080 0.1306130146 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
12 Hb_003058_180 0.1334426736 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
13 Hb_012762_070 0.1342994969 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]
14 Hb_001522_050 0.1380972447 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Jatropha curcas]
15 Hb_095532_010 0.1399001734 - - BnaC05g27570D [Brassica napus]
16 Hb_148817_010 0.141535439 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
17 Hb_001596_030 0.1434888845 - - PREDICTED: uncharacterized protein LOC105141672 [Populus euphratica]
18 Hb_000230_160 0.1458463676 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
19 Hb_021418_010 0.1463182049 - - PREDICTED: probable pectate lyase 12 [Prunus mume]
20 Hb_020805_110 0.1473919325 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]

Gene co-expression network

sample Hb_046191_010 Hb_046191_010 Hb_014115_010 Hb_014115_010 Hb_046191_010--Hb_014115_010 Hb_002499_020 Hb_002499_020 Hb_046191_010--Hb_002499_020 Hb_010571_010 Hb_010571_010 Hb_046191_010--Hb_010571_010 Hb_003469_030 Hb_003469_030 Hb_046191_010--Hb_003469_030 Hb_005056_030 Hb_005056_030 Hb_046191_010--Hb_005056_030 Hb_006120_010 Hb_006120_010 Hb_046191_010--Hb_006120_010 Hb_000306_050 Hb_000306_050 Hb_014115_010--Hb_000306_050 Hb_014115_010--Hb_005056_030 Hb_000081_030 Hb_000081_030 Hb_014115_010--Hb_000081_030 Hb_000761_030 Hb_000761_030 Hb_014115_010--Hb_000761_030 Hb_014115_010--Hb_006120_010 Hb_002499_020--Hb_010571_010 Hb_002499_020--Hb_006120_010 Hb_002499_020--Hb_005056_030 Hb_002499_020--Hb_003469_030 Hb_002499_020--Hb_014115_010 Hb_010571_010--Hb_003469_030 Hb_010571_010--Hb_006120_010 Hb_007181_080 Hb_007181_080 Hb_010571_010--Hb_007181_080 Hb_010571_010--Hb_005056_030 Hb_095532_010 Hb_095532_010 Hb_003469_030--Hb_095532_010 Hb_003469_030--Hb_014115_010 Hb_001522_050 Hb_001522_050 Hb_003469_030--Hb_001522_050 Hb_006268_010 Hb_006268_010 Hb_005056_030--Hb_006268_010 Hb_002622_020 Hb_002622_020 Hb_005056_030--Hb_002622_020 Hb_012762_070 Hb_012762_070 Hb_005056_030--Hb_012762_070 Hb_005056_030--Hb_000761_030 Hb_000472_030 Hb_000472_030 Hb_005056_030--Hb_000472_030 Hb_003058_180 Hb_003058_180 Hb_006120_010--Hb_003058_180 Hb_000230_160 Hb_000230_160 Hb_006120_010--Hb_000230_160 Hb_000077_450 Hb_000077_450 Hb_006120_010--Hb_000077_450 Hb_188923_010 Hb_188923_010 Hb_006120_010--Hb_188923_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.323491 0.0157638 0.952249 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.5845 0

CAGE analysis