Hb_046198_020

Information

Type -
Description -
Location Contig46198: 11802-16275
Sequence    

Annotation

kegg
ID rcu:RCOM_0497300
description hypothetical protein
nr
ID XP_002527852.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q39008
description Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana GN=MEKK1 PE=1 SV=2
trembl
ID B9SPD3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0497300 PE=4 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_046198_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000101_220 0.2076858787 - - anthranilate synthase component I, putative [Ricinus communis]
3 Hb_168893_010 0.2107878513 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
4 Hb_001195_190 0.2717351953 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011468_010 0.274024832 - - hypothetical protein B456_008G198600 [Gossypium raimondii]
6 Hb_000796_060 0.2836026681 - - Glycogenin-2 [Aegilops tauschii]
7 Hb_007382_020 0.2836750569 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
8 Hb_085375_010 0.2848527585 - - protein with unknown function [Ricinus communis]
9 Hb_000206_130 0.2991427084 - - unnamed protein product [Vitis vinifera]
10 Hb_025194_030 0.3001069436 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
11 Hb_000905_150 0.3010485861 - - Cytochrome P450 [Theobroma cacao]
12 Hb_097433_010 0.3101325645 - - PREDICTED: TPR repeat-containing thioredoxin TDX [Jatropha curcas]
13 Hb_003117_050 0.3101946226 - - -
14 Hb_002890_190 0.3145258072 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
15 Hb_013394_090 0.3161919342 - - conserved hypothetical protein [Ricinus communis]
16 Hb_029980_010 0.316473269 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
17 Hb_004970_040 0.3220563803 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
18 Hb_001504_090 0.3234040075 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
19 Hb_005730_100 0.3239983484 - - PREDICTED: 18.2 kDa class I heat shock protein-like [Gossypium raimondii]
20 Hb_006913_090 0.3244706832 - - PREDICTED: uncharacterized protein LOC101215996 [Cucumis sativus]

Gene co-expression network

sample Hb_046198_020 Hb_046198_020 Hb_000101_220 Hb_000101_220 Hb_046198_020--Hb_000101_220 Hb_168893_010 Hb_168893_010 Hb_046198_020--Hb_168893_010 Hb_001195_190 Hb_001195_190 Hb_046198_020--Hb_001195_190 Hb_011468_010 Hb_011468_010 Hb_046198_020--Hb_011468_010 Hb_000796_060 Hb_000796_060 Hb_046198_020--Hb_000796_060 Hb_007382_020 Hb_007382_020 Hb_046198_020--Hb_007382_020 Hb_000101_220--Hb_001195_190 Hb_010315_070 Hb_010315_070 Hb_000101_220--Hb_010315_070 Hb_007137_060 Hb_007137_060 Hb_000101_220--Hb_007137_060 Hb_000905_150 Hb_000905_150 Hb_000101_220--Hb_000905_150 Hb_013394_060 Hb_013394_060 Hb_000101_220--Hb_013394_060 Hb_168893_010--Hb_000796_060 Hb_005730_100 Hb_005730_100 Hb_168893_010--Hb_005730_100 Hb_020156_060 Hb_020156_060 Hb_168893_010--Hb_020156_060 Hb_029980_010 Hb_029980_010 Hb_168893_010--Hb_029980_010 Hb_085375_010 Hb_085375_010 Hb_168893_010--Hb_085375_010 Hb_010521_020 Hb_010521_020 Hb_001195_190--Hb_010521_020 Hb_004296_010 Hb_004296_010 Hb_001195_190--Hb_004296_010 Hb_000505_110 Hb_000505_110 Hb_001195_190--Hb_000505_110 Hb_001767_040 Hb_001767_040 Hb_001195_190--Hb_001767_040 Hb_001269_310 Hb_001269_310 Hb_001195_190--Hb_001269_310 Hb_000421_130 Hb_000421_130 Hb_001195_190--Hb_000421_130 Hb_003117_050 Hb_003117_050 Hb_011468_010--Hb_003117_050 Hb_003581_160 Hb_003581_160 Hb_011468_010--Hb_003581_160 Hb_011468_010--Hb_000796_060 Hb_013394_090 Hb_013394_090 Hb_011468_010--Hb_013394_090 Hb_000046_230 Hb_000046_230 Hb_011468_010--Hb_000046_230 Hb_048207_010 Hb_048207_010 Hb_000796_060--Hb_048207_010 Hb_000796_060--Hb_005730_100 Hb_001104_040 Hb_001104_040 Hb_000796_060--Hb_001104_040 Hb_001279_230 Hb_001279_230 Hb_000796_060--Hb_001279_230 Hb_000398_130 Hb_000398_130 Hb_000796_060--Hb_000398_130 Hb_025194_030 Hb_025194_030 Hb_007382_020--Hb_025194_030 Hb_004846_180 Hb_004846_180 Hb_007382_020--Hb_004846_180 Hb_008749_050 Hb_008749_050 Hb_007382_020--Hb_008749_050 Hb_184326_010 Hb_184326_010 Hb_007382_020--Hb_184326_010 Hb_168978_040 Hb_168978_040 Hb_007382_020--Hb_168978_040 Hb_003992_260 Hb_003992_260 Hb_007382_020--Hb_003992_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0439621 0.284546 0.215674 0.241211 1.91786 0.206576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.120142 0.174751 0

CAGE analysis