Hb_046590_010

Information

Type -
Description -
Location Contig46590: 627-2541
Sequence    

Annotation

kegg
ID rcu:RCOM_1506630
description Cycloeucalenol cycloisomerase, putative (EC:5.5.1.9)
nr
ID XP_002511208.1
description Cycloeucalenol cycloisomerase, putative [Ricinus communis]
swissprot
ID Q9M643
description Cycloeucalenol cycloisomerase OS=Arabidopsis thaliana GN=CPI1 PE=2 SV=1
trembl
ID B9RAI3
description Cycloeucalenol cycloisomerase, putative OS=Ricinus communis GN=RCOM_1506630 PE=4 SV=1
Gene Ontology
ID GO:0047793
description cycloeucalenol cycloisomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44083: 675-2427
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_046590_010 0.0 - - Cycloeucalenol cycloisomerase, putative [Ricinus communis]
2 Hb_005116_130 0.0905127215 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
3 Hb_001655_080 0.0909123921 - - Purple acid phosphatase precursor, putative [Ricinus communis]
4 Hb_000188_070 0.0936368603 - - calcineurin-like phosphoesterase [Manihot esculenta]
5 Hb_000494_010 0.0949382191 transcription factor TF Family: HB hypothetical protein POPTR_0014s04460g [Populus trichocarpa]
6 Hb_000110_240 0.0978295463 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
7 Hb_104014_010 0.1034045641 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
8 Hb_033834_020 0.1042609078 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000152_650 0.1056526893 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
10 Hb_000692_060 0.1130953043 - - calcium-dependent protein kinase, putative [Ricinus communis]
11 Hb_002499_050 0.1171067557 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_001442_050 0.1177769378 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
13 Hb_007254_010 0.120565916 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
14 Hb_000358_160 0.1256226446 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
15 Hb_000928_100 0.1259692576 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
16 Hb_000890_170 0.1261142882 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
17 Hb_001638_190 0.1262032016 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
18 Hb_001958_030 0.1295900244 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
19 Hb_010422_020 0.1313524379 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Jatropha curcas]
20 Hb_002027_100 0.1318306745 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_046590_010 Hb_046590_010 Hb_005116_130 Hb_005116_130 Hb_046590_010--Hb_005116_130 Hb_001655_080 Hb_001655_080 Hb_046590_010--Hb_001655_080 Hb_000188_070 Hb_000188_070 Hb_046590_010--Hb_000188_070 Hb_000494_010 Hb_000494_010 Hb_046590_010--Hb_000494_010 Hb_000110_240 Hb_000110_240 Hb_046590_010--Hb_000110_240 Hb_104014_010 Hb_104014_010 Hb_046590_010--Hb_104014_010 Hb_005116_130--Hb_000494_010 Hb_005116_130--Hb_000110_240 Hb_005116_130--Hb_000188_070 Hb_001442_050 Hb_001442_050 Hb_005116_130--Hb_001442_050 Hb_005116_130--Hb_001655_080 Hb_000358_160 Hb_000358_160 Hb_001655_080--Hb_000358_160 Hb_092516_010 Hb_092516_010 Hb_001655_080--Hb_092516_010 Hb_027684_010 Hb_027684_010 Hb_001655_080--Hb_027684_010 Hb_001269_060 Hb_001269_060 Hb_001655_080--Hb_001269_060 Hb_001638_190 Hb_001638_190 Hb_001655_080--Hb_001638_190 Hb_033834_020 Hb_033834_020 Hb_000188_070--Hb_033834_020 Hb_000692_060 Hb_000692_060 Hb_000188_070--Hb_000692_060 Hb_001958_030 Hb_001958_030 Hb_000188_070--Hb_001958_030 Hb_007254_010 Hb_007254_010 Hb_000188_070--Hb_007254_010 Hb_000188_070--Hb_001638_190 Hb_000928_100 Hb_000928_100 Hb_000188_070--Hb_000928_100 Hb_000494_010--Hb_000110_240 Hb_001579_190 Hb_001579_190 Hb_000494_010--Hb_001579_190 Hb_003077_010 Hb_003077_010 Hb_000494_010--Hb_003077_010 Hb_000500_330 Hb_000500_330 Hb_000494_010--Hb_000500_330 Hb_000110_240--Hb_000500_330 Hb_000110_240--Hb_001579_190 Hb_000110_240--Hb_001442_050 Hb_000051_150 Hb_000051_150 Hb_104014_010--Hb_000051_150 Hb_001913_070 Hb_001913_070 Hb_104014_010--Hb_001913_070 Hb_000152_650 Hb_000152_650 Hb_104014_010--Hb_000152_650 Hb_010422_020 Hb_010422_020 Hb_104014_010--Hb_010422_020 Hb_001369_590 Hb_001369_590 Hb_104014_010--Hb_001369_590 Hb_005365_040 Hb_005365_040 Hb_104014_010--Hb_005365_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.299386 7.95555 63.5226 11.7332 0.174362 0.164178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.366061 0.0959536 0.524192 1.47217 21.5359

CAGE analysis