Hb_046615_020

Information

Type -
Description -
Location Contig46615: 6001-11204
Sequence    

Annotation

kegg
ID rcu:RCOM_0906720
description hypothetical protein
nr
ID XP_012091434.1
description PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JMU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44089: 6107-11141 , PASA_asmbl_44090: 6107-11141 , PASA_asmbl_44091: 7884-8289
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_046615_020 0.0 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
2 Hb_001975_020 0.0536882451 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
3 Hb_002043_170 0.0560781134 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
4 Hb_000230_370 0.0604295081 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
5 Hb_031754_010 0.0657159256 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
6 Hb_004096_020 0.0663043854 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
7 Hb_000531_090 0.0664619337 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
8 Hb_033594_020 0.0667299987 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
9 Hb_000035_040 0.0690794441 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
10 Hb_003656_160 0.0697656792 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
11 Hb_000327_310 0.0717824963 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
12 Hb_002883_010 0.0731411287 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
13 Hb_025477_060 0.0743017482 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
14 Hb_001437_100 0.0744686494 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
15 Hb_000343_210 0.0756678254 - - ran-binding protein, putative [Ricinus communis]
16 Hb_000244_240 0.0768543899 - - ATP binding protein, putative [Ricinus communis]
17 Hb_000335_010 0.0780128445 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_125092_020 0.0796599815 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
19 Hb_004128_080 0.0800295884 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
20 Hb_002400_180 0.0806461757 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_046615_020 Hb_046615_020 Hb_001975_020 Hb_001975_020 Hb_046615_020--Hb_001975_020 Hb_002043_170 Hb_002043_170 Hb_046615_020--Hb_002043_170 Hb_000230_370 Hb_000230_370 Hb_046615_020--Hb_000230_370 Hb_031754_010 Hb_031754_010 Hb_046615_020--Hb_031754_010 Hb_004096_020 Hb_004096_020 Hb_046615_020--Hb_004096_020 Hb_000531_090 Hb_000531_090 Hb_046615_020--Hb_000531_090 Hb_000327_310 Hb_000327_310 Hb_001975_020--Hb_000327_310 Hb_001975_020--Hb_031754_010 Hb_005295_040 Hb_005295_040 Hb_001975_020--Hb_005295_040 Hb_000116_280 Hb_000116_280 Hb_001975_020--Hb_000116_280 Hb_003018_160 Hb_003018_160 Hb_001975_020--Hb_003018_160 Hb_001437_100 Hb_001437_100 Hb_002043_170--Hb_001437_100 Hb_000640_320 Hb_000640_320 Hb_002043_170--Hb_000640_320 Hb_002883_010 Hb_002883_010 Hb_002043_170--Hb_002883_010 Hb_000035_040 Hb_000035_040 Hb_002043_170--Hb_000035_040 Hb_000335_010 Hb_000335_010 Hb_002043_170--Hb_000335_010 Hb_000230_370--Hb_000327_310 Hb_001301_210 Hb_001301_210 Hb_000230_370--Hb_001301_210 Hb_000230_370--Hb_002883_010 Hb_000230_370--Hb_001975_020 Hb_000318_140 Hb_000318_140 Hb_000230_370--Hb_000318_140 Hb_031754_010--Hb_000335_010 Hb_031754_010--Hb_000035_040 Hb_031754_010--Hb_002883_010 Hb_000424_010 Hb_000424_010 Hb_031754_010--Hb_000424_010 Hb_001871_040 Hb_001871_040 Hb_004096_020--Hb_001871_040 Hb_003406_040 Hb_003406_040 Hb_004096_020--Hb_003406_040 Hb_123777_030 Hb_123777_030 Hb_004096_020--Hb_123777_030 Hb_000195_020 Hb_000195_020 Hb_004096_020--Hb_000195_020 Hb_000357_080 Hb_000357_080 Hb_004096_020--Hb_000357_080 Hb_125092_020 Hb_125092_020 Hb_000531_090--Hb_125092_020 Hb_002893_150 Hb_002893_150 Hb_000531_090--Hb_002893_150 Hb_000789_080 Hb_000789_080 Hb_000531_090--Hb_000789_080 Hb_000531_090--Hb_000035_040 Hb_000343_210 Hb_000343_210 Hb_000531_090--Hb_000343_210 Hb_147737_010 Hb_147737_010 Hb_000531_090--Hb_147737_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.083 30.2358 18.8372 13.6743 67.1578 78.5662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.2062 13.1679 30.3878 22.1588 20.2792

CAGE analysis