Hb_046727_010

Information

Type -
Description -
Location Contig46727: 860-2877
Sequence    

Annotation

kegg
ID pda:103699224
description uncharacterized LOC103699224
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID S1S3V9
description Gag protease polyprotein-like protein OS=Theobroma cacao GN=TCM_045983 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_046727_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_080765_020 0.0031880341 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_000098_280 0.0174052767 - - PREDICTED: pentatricopeptide repeat-containing protein At1g33350 [Jatropha curcas]
4 Hb_007008_020 0.0204327211 - - -
5 Hb_000953_150 0.0240579626 - - -
6 Hb_000100_050 0.0454866271 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
7 Hb_011978_010 0.0462246852 - - hypothetical protein JCGZ_03852 [Jatropha curcas]
8 Hb_000375_380 0.0465835442 - - -
9 Hb_004324_380 0.05005321 - - -
10 Hb_027393_020 0.0619882781 - - -
11 Hb_007963_050 0.089494207 - - -
12 Hb_009693_040 0.0961724531 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Brassica rapa]
13 Hb_003607_030 0.106744152 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
14 Hb_002163_060 0.1410021366 - - -
15 Hb_002805_320 0.1532525077 - - -
16 Hb_140049_070 0.1572256143 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000038_160 0.15826326 - - putative gag protein [Coffea canephora]
18 Hb_005867_010 0.1961002764 - - -
19 Hb_000926_220 0.2017339176 - - -
20 Hb_001364_020 0.2047802514 - - -

Gene co-expression network

sample Hb_046727_010 Hb_046727_010 Hb_080765_020 Hb_080765_020 Hb_046727_010--Hb_080765_020 Hb_000098_280 Hb_000098_280 Hb_046727_010--Hb_000098_280 Hb_007008_020 Hb_007008_020 Hb_046727_010--Hb_007008_020 Hb_000953_150 Hb_000953_150 Hb_046727_010--Hb_000953_150 Hb_000100_050 Hb_000100_050 Hb_046727_010--Hb_000100_050 Hb_011978_010 Hb_011978_010 Hb_046727_010--Hb_011978_010 Hb_080765_020--Hb_000098_280 Hb_080765_020--Hb_000953_150 Hb_080765_020--Hb_007008_020 Hb_080765_020--Hb_000100_050 Hb_080765_020--Hb_011978_010 Hb_000098_280--Hb_000953_150 Hb_000098_280--Hb_007008_020 Hb_000098_280--Hb_000100_050 Hb_000098_280--Hb_011978_010 Hb_007008_020--Hb_000100_050 Hb_007008_020--Hb_011978_010 Hb_000375_380 Hb_000375_380 Hb_007008_020--Hb_000375_380 Hb_004324_380 Hb_004324_380 Hb_007008_020--Hb_004324_380 Hb_000953_150--Hb_007008_020 Hb_007963_050 Hb_007963_050 Hb_000953_150--Hb_007963_050 Hb_000953_150--Hb_000100_050 Hb_000100_050--Hb_011978_010 Hb_000100_050--Hb_000375_380 Hb_000100_050--Hb_004324_380 Hb_027393_020 Hb_027393_020 Hb_000100_050--Hb_027393_020 Hb_011978_010--Hb_000375_380 Hb_011978_010--Hb_004324_380 Hb_011978_010--Hb_027393_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0131152 0 0 0 0.009897 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis