Hb_046931_010

Information

Type -
Description -
Location Contig46931: 163-543
Sequence    

Annotation

kegg
ID rcu:RCOM_1443460
description hypothetical protein
nr
ID KDP41906.1
description hypothetical protein JCGZ_26924 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L0C4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26924 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_046931_010 0.0 - - hypothetical protein JCGZ_26924 [Jatropha curcas]
2 Hb_011030_010 0.0942336417 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
3 Hb_019813_010 0.0942737986 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
4 Hb_000531_090 0.0943227966 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
5 Hb_010193_050 0.0954517777 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000787_170 0.0963376463 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
7 Hb_000755_030 0.0971215899 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
8 Hb_002716_140 0.0973893138 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
9 Hb_006951_020 0.0978484198 - - Rop3 [Hevea brasiliensis]
10 Hb_000939_060 0.0978873117 - - PREDICTED: DNA repair protein REV1 [Jatropha curcas]
11 Hb_004678_060 0.0984654544 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
12 Hb_000322_100 0.0992891234 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
13 Hb_000343_210 0.1019504981 - - ran-binding protein, putative [Ricinus communis]
14 Hb_031091_010 0.1027480706 - - crooked neck protein, putative [Ricinus communis]
15 Hb_000645_120 0.1031427126 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
16 Hb_000034_050 0.1037230603 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
17 Hb_008714_020 0.1038539317 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
18 Hb_020000_020 0.1045384965 - - Troponin C, skeletal muscle, putative [Ricinus communis]
19 Hb_004970_150 0.1050601436 - - PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]
20 Hb_147737_010 0.105239439 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_046931_010 Hb_046931_010 Hb_011030_010 Hb_011030_010 Hb_046931_010--Hb_011030_010 Hb_019813_010 Hb_019813_010 Hb_046931_010--Hb_019813_010 Hb_000531_090 Hb_000531_090 Hb_046931_010--Hb_000531_090 Hb_010193_050 Hb_010193_050 Hb_046931_010--Hb_010193_050 Hb_000787_170 Hb_000787_170 Hb_046931_010--Hb_000787_170 Hb_000755_030 Hb_000755_030 Hb_046931_010--Hb_000755_030 Hb_033187_050 Hb_033187_050 Hb_011030_010--Hb_033187_050 Hb_003531_060 Hb_003531_060 Hb_011030_010--Hb_003531_060 Hb_000915_050 Hb_000915_050 Hb_011030_010--Hb_000915_050 Hb_005321_020 Hb_005321_020 Hb_011030_010--Hb_005321_020 Hb_002163_030 Hb_002163_030 Hb_011030_010--Hb_002163_030 Hb_000283_070 Hb_000283_070 Hb_011030_010--Hb_000283_070 Hb_002301_260 Hb_002301_260 Hb_019813_010--Hb_002301_260 Hb_000160_220 Hb_000160_220 Hb_019813_010--Hb_000160_220 Hb_002960_160 Hb_002960_160 Hb_019813_010--Hb_002960_160 Hb_000939_060 Hb_000939_060 Hb_019813_010--Hb_000939_060 Hb_003847_120 Hb_003847_120 Hb_019813_010--Hb_003847_120 Hb_125092_020 Hb_125092_020 Hb_000531_090--Hb_125092_020 Hb_002893_150 Hb_002893_150 Hb_000531_090--Hb_002893_150 Hb_000789_080 Hb_000789_080 Hb_000531_090--Hb_000789_080 Hb_000035_040 Hb_000035_040 Hb_000531_090--Hb_000035_040 Hb_000343_210 Hb_000343_210 Hb_000531_090--Hb_000343_210 Hb_147737_010 Hb_147737_010 Hb_000531_090--Hb_147737_010 Hb_000567_010 Hb_000567_010 Hb_010193_050--Hb_000567_010 Hb_003124_130 Hb_003124_130 Hb_010193_050--Hb_003124_130 Hb_000768_110 Hb_000768_110 Hb_010193_050--Hb_000768_110 Hb_003605_130 Hb_003605_130 Hb_010193_050--Hb_003605_130 Hb_000329_130 Hb_000329_130 Hb_010193_050--Hb_000329_130 Hb_000645_120 Hb_000645_120 Hb_010193_050--Hb_000645_120 Hb_000787_170--Hb_000939_060 Hb_000394_190 Hb_000394_190 Hb_000787_170--Hb_000394_190 Hb_000261_250 Hb_000261_250 Hb_000787_170--Hb_000261_250 Hb_003467_010 Hb_003467_010 Hb_000787_170--Hb_003467_010 Hb_035318_010 Hb_035318_010 Hb_000787_170--Hb_035318_010 Hb_000140_330 Hb_000140_330 Hb_000787_170--Hb_000140_330 Hb_093432_010 Hb_093432_010 Hb_000755_030--Hb_093432_010 Hb_006951_020 Hb_006951_020 Hb_000755_030--Hb_006951_020 Hb_000755_030--Hb_000645_120 Hb_009969_030 Hb_009969_030 Hb_000755_030--Hb_009969_030 Hb_000755_030--Hb_033187_050 Hb_011310_210 Hb_011310_210 Hb_000755_030--Hb_011310_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.4813 10.4073 5.5037 7.85571 12.5773 23.2869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.57628 7.40466 7.86657 4.99535 5.3545

CAGE analysis