Hb_047040_010

Information

Type -
Description -
Location Contig47040: 33-515
Sequence    

Annotation

kegg
ID pmum:103322015
description uncharacterized LOC103322015
nr
ID AAP43916.1
description integrase [Gossypium herbaceum]
swissprot
ID -
description -
trembl
ID Q7XYU4
description Integrase (Fragment) OS=Gossypium herbaceum PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047040_010 0.0 - - integrase [Gossypium herbaceum]
2 Hb_000590_020 0.0046430457 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
3 Hb_022206_060 0.0082983764 - - -
4 Hb_090826_010 0.0126768081 - - PREDICTED: uncharacterized protein LOC105786910 [Gossypium raimondii]
5 Hb_000139_440 0.0154702428 - - unnamed protein product [Coffea canephora]
6 Hb_030928_010 0.0174105405 - - -
7 Hb_181535_010 0.0181079659 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
8 Hb_000351_030 0.0204821162 - - putative NBS-LRR type disease resistance protein [Prunus persica]
9 Hb_139388_010 0.0207985102 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]
10 Hb_001110_020 0.0213281613 - - hypothetical protein JCGZ_03693 [Jatropha curcas]
11 Hb_149358_010 0.0235772892 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_083493_050 0.0249592369 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
13 Hb_076908_010 0.0254817477 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
14 Hb_000174_190 0.0262061346 - - unnamed protein product [Coffea canephora]
15 Hb_004785_010 0.0303261909 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_168311_010 0.0382066979 - - -
17 Hb_125847_010 0.0953368945 - - -
18 Hb_012286_070 0.1068682154 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
19 Hb_000450_140 0.1069663174 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
20 Hb_020818_010 0.1093687886 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_047040_010 Hb_047040_010 Hb_000590_020 Hb_000590_020 Hb_047040_010--Hb_000590_020 Hb_022206_060 Hb_022206_060 Hb_047040_010--Hb_022206_060 Hb_090826_010 Hb_090826_010 Hb_047040_010--Hb_090826_010 Hb_000139_440 Hb_000139_440 Hb_047040_010--Hb_000139_440 Hb_030928_010 Hb_030928_010 Hb_047040_010--Hb_030928_010 Hb_181535_010 Hb_181535_010 Hb_047040_010--Hb_181535_010 Hb_000590_020--Hb_000139_440 Hb_000590_020--Hb_022206_060 Hb_000590_020--Hb_090826_010 Hb_000590_020--Hb_030928_010 Hb_000590_020--Hb_181535_010 Hb_022206_060--Hb_090826_010 Hb_022206_060--Hb_030928_010 Hb_022206_060--Hb_181535_010 Hb_000351_030 Hb_000351_030 Hb_022206_060--Hb_000351_030 Hb_139388_010 Hb_139388_010 Hb_022206_060--Hb_139388_010 Hb_090826_010--Hb_030928_010 Hb_090826_010--Hb_181535_010 Hb_090826_010--Hb_000351_030 Hb_090826_010--Hb_139388_010 Hb_001110_020 Hb_001110_020 Hb_090826_010--Hb_001110_020 Hb_168311_010 Hb_168311_010 Hb_000139_440--Hb_168311_010 Hb_000139_440--Hb_022206_060 Hb_000139_440--Hb_090826_010 Hb_000139_440--Hb_030928_010 Hb_030928_010--Hb_181535_010 Hb_030928_010--Hb_000351_030 Hb_030928_010--Hb_139388_010 Hb_030928_010--Hb_001110_020 Hb_149358_010 Hb_149358_010 Hb_030928_010--Hb_149358_010 Hb_181535_010--Hb_000351_030 Hb_181535_010--Hb_139388_010 Hb_181535_010--Hb_001110_020 Hb_181535_010--Hb_149358_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.187787 0.0465783 0

CAGE analysis