Hb_047287_040

Information

Type -
Description -
Location Contig47287: 43773-48457
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007213082.1
description hypothetical protein PRUPE_ppa021229mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5WLY8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047287_040 0.0 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
2 Hb_000713_020 0.3346105056 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_000836_200 0.349783258 - - -
4 Hb_105061_010 0.35211697 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
5 Hb_004204_090 0.360999056 - - hypothetical protein JCGZ_11697 [Jatropha curcas]
6 Hb_115784_010 0.3720526688 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
7 Hb_002175_040 0.3748469412 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
8 Hb_000934_200 0.383129799 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
9 Hb_001999_270 0.3888924797 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
10 Hb_000275_180 0.3933212422 - - -
11 Hb_003371_240 0.3950148982 - - hypothetical protein JCGZ_16702 [Jatropha curcas]
12 Hb_004413_040 0.4003736286 - - -
13 Hb_002998_050 0.4019729802 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Sesamum indicum]
14 Hb_002231_050 0.40410195 - - -
15 Hb_001341_110 0.4095814432 - - PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]
16 Hb_011401_010 0.4103089874 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
17 Hb_000243_020 0.410605376 - - -
18 Hb_001722_030 0.4114102833 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105123768 isoform X2 [Populus euphratica]
19 Hb_002135_040 0.4197891753 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
20 Hb_032299_050 0.420323489 - - -

Gene co-expression network

sample Hb_047287_040 Hb_047287_040 Hb_000713_020 Hb_000713_020 Hb_047287_040--Hb_000713_020 Hb_000836_200 Hb_000836_200 Hb_047287_040--Hb_000836_200 Hb_105061_010 Hb_105061_010 Hb_047287_040--Hb_105061_010 Hb_004204_090 Hb_004204_090 Hb_047287_040--Hb_004204_090 Hb_115784_010 Hb_115784_010 Hb_047287_040--Hb_115784_010 Hb_002175_040 Hb_002175_040 Hb_047287_040--Hb_002175_040 Hb_000179_150 Hb_000179_150 Hb_000713_020--Hb_000179_150 Hb_000189_360 Hb_000189_360 Hb_000713_020--Hb_000189_360 Hb_133311_010 Hb_133311_010 Hb_000713_020--Hb_133311_010 Hb_084889_010 Hb_084889_010 Hb_000713_020--Hb_084889_010 Hb_011242_030 Hb_011242_030 Hb_000713_020--Hb_011242_030 Hb_114839_010 Hb_114839_010 Hb_000713_020--Hb_114839_010 Hb_032299_050 Hb_032299_050 Hb_000836_200--Hb_032299_050 Hb_000889_090 Hb_000889_090 Hb_000836_200--Hb_000889_090 Hb_004732_010 Hb_004732_010 Hb_000836_200--Hb_004732_010 Hb_001059_020 Hb_001059_020 Hb_000836_200--Hb_001059_020 Hb_002534_110 Hb_002534_110 Hb_000836_200--Hb_002534_110 Hb_006452_130 Hb_006452_130 Hb_000836_200--Hb_006452_130 Hb_001999_270 Hb_001999_270 Hb_105061_010--Hb_001999_270 Hb_004413_040 Hb_004413_040 Hb_105061_010--Hb_004413_040 Hb_002461_050 Hb_002461_050 Hb_105061_010--Hb_002461_050 Hb_126508_010 Hb_126508_010 Hb_105061_010--Hb_126508_010 Hb_003992_010 Hb_003992_010 Hb_105061_010--Hb_003992_010 Hb_000345_470 Hb_000345_470 Hb_105061_010--Hb_000345_470 Hb_042404_010 Hb_042404_010 Hb_004204_090--Hb_042404_010 Hb_003018_110 Hb_003018_110 Hb_004204_090--Hb_003018_110 Hb_007778_020 Hb_007778_020 Hb_004204_090--Hb_007778_020 Hb_188209_010 Hb_188209_010 Hb_004204_090--Hb_188209_010 Hb_004204_090--Hb_114839_010 Hb_004204_090--Hb_133311_010 Hb_070820_010 Hb_070820_010 Hb_115784_010--Hb_070820_010 Hb_000086_330 Hb_000086_330 Hb_115784_010--Hb_000086_330 Hb_141383_010 Hb_141383_010 Hb_115784_010--Hb_141383_010 Hb_002301_240 Hb_002301_240 Hb_115784_010--Hb_002301_240 Hb_000931_030 Hb_000931_030 Hb_115784_010--Hb_000931_030 Hb_115784_010--Hb_004732_010 Hb_000705_300 Hb_000705_300 Hb_002175_040--Hb_000705_300 Hb_001366_080 Hb_001366_080 Hb_002175_040--Hb_001366_080 Hb_011689_130 Hb_011689_130 Hb_002175_040--Hb_011689_130 Hb_010913_010 Hb_010913_010 Hb_002175_040--Hb_010913_010 Hb_148891_010 Hb_148891_010 Hb_002175_040--Hb_148891_010 Hb_000445_330 Hb_000445_330 Hb_002175_040--Hb_000445_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00635513 0.0050775 0.00400125 0 0 0.00448777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.011649 0 0 0 0

CAGE analysis