Hb_047612_010

Information

Type -
Description -
Location Contig47612: 2-601
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11090g
description POPTRDRAFT_578695; glutamine amidotransferase class-I domain-containing family protein
nr
ID XP_002324516.1
description glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
swissprot
ID Q12288
description Putative glutamine amidotransferase YLR126C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR126C PE=1 SV=1
trembl
ID B9IM91
description Glutamine amidotransferase class-I domain-containing family protein OS=Populus trichocarpa GN=POPTR_0018s11090g PE=4 SV=1
Gene Ontology
ID GO:0003677
description glutamine amidotransferase ylr126c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047612_010 0.0 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
2 Hb_009252_070 0.0749300788 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
3 Hb_000368_050 0.0774504692 - - beta-galactosidase, putative [Ricinus communis]
4 Hb_002925_060 0.0948099629 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
5 Hb_001534_140 0.0952867904 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
6 Hb_182869_010 0.0965401787 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
7 Hb_012395_060 0.0980087285 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
8 Hb_000620_050 0.1085097724 - - PREDICTED: uncharacterized protein LOC105649924 [Jatropha curcas]
9 Hb_000813_070 0.110655545 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010142_060 0.1135373303 - - Blue copper protein precursor, putative [Ricinus communis]
11 Hb_001195_710 0.1147985174 - - glycosyltransferase family GT8 protein [Populus deltoides]
12 Hb_000676_230 0.1165618501 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
13 Hb_001268_290 0.1202663764 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
14 Hb_001688_050 0.1208684802 - - PREDICTED: reticulon-like protein B9 [Jatropha curcas]
15 Hb_000193_070 0.1211249784 - - hypothetical protein JCGZ_25373 [Jatropha curcas]
16 Hb_138585_010 0.1226180735 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
17 Hb_003376_140 0.1233161112 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
18 Hb_003058_240 0.1239293284 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
19 Hb_169077_030 0.1239677021 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
20 Hb_000364_090 0.1261782242 - - PREDICTED: filament-like plant protein 7 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_047612_010 Hb_047612_010 Hb_009252_070 Hb_009252_070 Hb_047612_010--Hb_009252_070 Hb_000368_050 Hb_000368_050 Hb_047612_010--Hb_000368_050 Hb_002925_060 Hb_002925_060 Hb_047612_010--Hb_002925_060 Hb_001534_140 Hb_001534_140 Hb_047612_010--Hb_001534_140 Hb_182869_010 Hb_182869_010 Hb_047612_010--Hb_182869_010 Hb_012395_060 Hb_012395_060 Hb_047612_010--Hb_012395_060 Hb_009252_070--Hb_000368_050 Hb_005269_060 Hb_005269_060 Hb_009252_070--Hb_005269_060 Hb_138585_010 Hb_138585_010 Hb_009252_070--Hb_138585_010 Hb_004650_110 Hb_004650_110 Hb_009252_070--Hb_004650_110 Hb_000103_440 Hb_000103_440 Hb_009252_070--Hb_000103_440 Hb_000368_050--Hb_182869_010 Hb_000676_230 Hb_000676_230 Hb_000368_050--Hb_000676_230 Hb_000368_050--Hb_001534_140 Hb_010142_060 Hb_010142_060 Hb_000368_050--Hb_010142_060 Hb_001408_200 Hb_001408_200 Hb_002925_060--Hb_001408_200 Hb_000620_050 Hb_000620_050 Hb_002925_060--Hb_000620_050 Hb_002925_060--Hb_182869_010 Hb_003058_240 Hb_003058_240 Hb_002925_060--Hb_003058_240 Hb_000402_060 Hb_000402_060 Hb_002925_060--Hb_000402_060 Hb_001534_140--Hb_010142_060 Hb_005332_160 Hb_005332_160 Hb_001534_140--Hb_005332_160 Hb_001534_140--Hb_138585_010 Hb_169077_030 Hb_169077_030 Hb_001534_140--Hb_169077_030 Hb_001534_140--Hb_012395_060 Hb_001511_220 Hb_001511_220 Hb_182869_010--Hb_001511_220 Hb_182869_010--Hb_000620_050 Hb_005711_030 Hb_005711_030 Hb_182869_010--Hb_005711_030 Hb_182869_010--Hb_003058_240 Hb_012395_060--Hb_169077_030 Hb_004804_010 Hb_004804_010 Hb_012395_060--Hb_004804_010 Hb_001269_660 Hb_001269_660 Hb_012395_060--Hb_001269_660 Hb_012395_060--Hb_138585_010 Hb_000152_570 Hb_000152_570 Hb_012395_060--Hb_000152_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0908528 0.194615 0.734963 4.13026 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.366334 2.34962

CAGE analysis