Hb_047691_010

Information

Type -
Description -
Location Contig47691: 2-1014
Sequence    

Annotation

kegg
ID bdi:100827773
description B2 protein
nr
ID KHG30353.1
description Uncharacterized protein F383_01974 [Gossypium arboreum]
swissprot
ID P37707
description B2 protein OS=Daucus carota PE=2 SV=1
trembl
ID A0A0B0PV53
description Uncharacterized protein OS=Gossypium arboreum GN=F383_01974 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047691_010 0.0 - - Uncharacterized protein F383_01974 [Gossypium arboreum]
2 Hb_001059_140 0.1691903622 - - hypothetical protein POPTR_0004s03390g [Populus trichocarpa]
3 Hb_121694_010 0.1734555741 - - structural constituent of ribosome, putative [Ricinus communis]
4 Hb_041601_010 0.2048155181 - - -
5 Hb_017014_020 0.2125495902 - - -
6 Hb_009083_030 0.2131978835 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
7 Hb_007527_070 0.2157212929 - - PREDICTED: uncharacterized protein LOC105637197 [Jatropha curcas]
8 Hb_006910_050 0.2170320464 - - hypothetical protein CISIN_1g0480481mg, partial [Citrus sinensis]
9 Hb_162090_010 0.2327377822 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
10 Hb_000034_090 0.2332275301 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
11 Hb_000251_020 0.2335829535 - - hypothetical protein CISIN_1g028541mg [Citrus sinensis]
12 Hb_003642_020 0.2338282351 - - chlorophyll(ide) b reductase, partial [Pyrus x bretschneideri]
13 Hb_000953_120 0.2341358754 - - -
14 Hb_006162_020 0.2370155661 - - -
15 Hb_099298_010 0.2391613726 - - -
16 Hb_022891_010 0.2410003444 - - chitinase-like protein [Hevea brasiliensis]
17 Hb_005271_230 0.2423384239 - - PREDICTED: uncharacterized protein LOC105645849 isoform X4 [Jatropha curcas]
18 Hb_188313_010 0.244266582 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
19 Hb_010984_040 0.2515070044 - - hypothetical protein M569_17286, partial [Genlisea aurea]
20 Hb_022614_010 0.2527317691 - - -

Gene co-expression network

sample Hb_047691_010 Hb_047691_010 Hb_001059_140 Hb_001059_140 Hb_047691_010--Hb_001059_140 Hb_121694_010 Hb_121694_010 Hb_047691_010--Hb_121694_010 Hb_041601_010 Hb_041601_010 Hb_047691_010--Hb_041601_010 Hb_017014_020 Hb_017014_020 Hb_047691_010--Hb_017014_020 Hb_009083_030 Hb_009083_030 Hb_047691_010--Hb_009083_030 Hb_007527_070 Hb_007527_070 Hb_047691_010--Hb_007527_070 Hb_048702_010 Hb_048702_010 Hb_001059_140--Hb_048702_010 Hb_001059_140--Hb_017014_020 Hb_001059_140--Hb_121694_010 Hb_099990_020 Hb_099990_020 Hb_001059_140--Hb_099990_020 Hb_184541_010 Hb_184541_010 Hb_001059_140--Hb_184541_010 Hb_121694_010--Hb_009083_030 Hb_121694_010--Hb_184541_010 Hb_010984_040 Hb_010984_040 Hb_121694_010--Hb_010984_040 Hb_004125_070 Hb_004125_070 Hb_121694_010--Hb_004125_070 Hb_000953_120 Hb_000953_120 Hb_041601_010--Hb_000953_120 Hb_000251_020 Hb_000251_020 Hb_041601_010--Hb_000251_020 Hb_000034_090 Hb_000034_090 Hb_041601_010--Hb_000034_090 Hb_162090_010 Hb_162090_010 Hb_041601_010--Hb_162090_010 Hb_002016_030 Hb_002016_030 Hb_041601_010--Hb_002016_030 Hb_000025_080 Hb_000025_080 Hb_041601_010--Hb_000025_080 Hb_022614_010 Hb_022614_010 Hb_017014_020--Hb_022614_010 Hb_017014_020--Hb_162090_010 Hb_006162_020 Hb_006162_020 Hb_017014_020--Hb_006162_020 Hb_017014_020--Hb_009083_030 Hb_188313_010 Hb_188313_010 Hb_017014_020--Hb_188313_010 Hb_017014_020--Hb_000025_080 Hb_009083_030--Hb_188313_010 Hb_182713_020 Hb_182713_020 Hb_009083_030--Hb_182713_020 Hb_100137_010 Hb_100137_010 Hb_009083_030--Hb_100137_010 Hb_009083_030--Hb_184541_010 Hb_002611_030 Hb_002611_030 Hb_009083_030--Hb_002611_030 Hb_006910_050 Hb_006910_050 Hb_007527_070--Hb_006910_050 Hb_007527_070--Hb_002611_030 Hb_000168_010 Hb_000168_010 Hb_007527_070--Hb_000168_010 Hb_130367_010 Hb_130367_010 Hb_007527_070--Hb_130367_010 Hb_007527_070--Hb_121694_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.72709 0.594803 13.8081 0.12282 6.15012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.35797 0.339274 2.44701 1.48145

CAGE analysis