Hb_047735_010

Information

Type -
Description -
Location Contig47735: 14099-18801
Sequence    

Annotation

kegg
ID tcc:TCM_044877
description DNA/RNA polymerases superfamily protein, putative
nr
ID XP_007010875.1
description DNA/RNA polymerases superfamily protein, putative [Theobroma cacao]
swissprot
ID O93209
description Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1
trembl
ID A0A061FQY7
description DNA/RNA polymerases superfamily protein, putative OS=Theobroma cacao GN=TCM_044877 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047735_010 0.0 - - DNA/RNA polymerases superfamily protein, putative [Theobroma cacao]
2 Hb_155103_010 0.05476573 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_003589_010 0.058112047 - - -
4 Hb_008948_030 0.060275305 - - hypothetical protein RCOM_0224470 [Ricinus communis]
5 Hb_003878_160 0.0642969114 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007809_070 0.0764905015 - - conserved hypothetical protein [Ricinus communis]
7 Hb_181132_010 0.0787375143 - - -
8 Hb_000757_080 0.0822138745 - - vacuolar ATP synthase subunit G plant, putative [Ricinus communis]
9 Hb_100821_010 0.0939865942 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
10 Hb_022790_030 0.0955679209 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
11 Hb_002928_080 0.0992321989 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
12 Hb_002392_060 0.0998718808 - - gag/pol protein [Bryonia dioica]
13 Hb_001433_010 0.1279197661 - - -
14 Hb_020805_020 0.1310989928 - - -
15 Hb_002240_030 0.1405445457 - - -
16 Hb_000046_130 0.1445588965 - - Peroxidase 27 precursor, putative [Ricinus communis]
17 Hb_002495_020 0.2062781007 - - hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]
18 Hb_001488_050 0.2296916113 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like [Jatropha curcas]
19 Hb_001948_010 0.322496906 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
20 Hb_018616_030 0.3371296458 - - hypothetical protein B456_008G198600 [Gossypium raimondii]

Gene co-expression network

sample Hb_047735_010 Hb_047735_010 Hb_155103_010 Hb_155103_010 Hb_047735_010--Hb_155103_010 Hb_003589_010 Hb_003589_010 Hb_047735_010--Hb_003589_010 Hb_008948_030 Hb_008948_030 Hb_047735_010--Hb_008948_030 Hb_003878_160 Hb_003878_160 Hb_047735_010--Hb_003878_160 Hb_007809_070 Hb_007809_070 Hb_047735_010--Hb_007809_070 Hb_181132_010 Hb_181132_010 Hb_047735_010--Hb_181132_010 Hb_155103_010--Hb_003589_010 Hb_155103_010--Hb_008948_030 Hb_155103_010--Hb_003878_160 Hb_155103_010--Hb_181132_010 Hb_000757_080 Hb_000757_080 Hb_155103_010--Hb_000757_080 Hb_100821_010 Hb_100821_010 Hb_155103_010--Hb_100821_010 Hb_003589_010--Hb_008948_030 Hb_003589_010--Hb_003878_160 Hb_003589_010--Hb_181132_010 Hb_003589_010--Hb_000757_080 Hb_003589_010--Hb_100821_010 Hb_008948_030--Hb_003878_160 Hb_008948_030--Hb_181132_010 Hb_008948_030--Hb_000757_080 Hb_008948_030--Hb_100821_010 Hb_003878_160--Hb_181132_010 Hb_003878_160--Hb_000757_080 Hb_003878_160--Hb_100821_010 Hb_022790_030 Hb_022790_030 Hb_007809_070--Hb_022790_030 Hb_007809_070--Hb_155103_010 Hb_007809_070--Hb_003589_010 Hb_007809_070--Hb_008948_030 Hb_007809_070--Hb_003878_160 Hb_181132_010--Hb_000757_080 Hb_181132_010--Hb_100821_010 Hb_002928_080 Hb_002928_080 Hb_181132_010--Hb_002928_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00598979 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0068449 0

CAGE analysis