Hb_047823_010

Information

Type -
Description -
Location Contig47823: 19079-20728
Sequence    

Annotation

kegg
ID eus:EUTSA_v10002103mg
description hypothetical protein
nr
ID XP_006294957.1
description hypothetical protein CARUB_v10024013mg [Capsella rubella]
swissprot
ID Q682T9
description Calmodulin-5 OS=Arabidopsis thaliana GN=CAM5 PE=1 SV=1
trembl
ID V4MC59
description Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10002103mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description calmodulin-7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44545: 20500-20624
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047823_010 0.0 - - hypothetical protein CARUB_v10024013mg [Capsella rubella]
2 Hb_007044_130 0.089916262 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
3 Hb_002301_130 0.091409395 - - PREDICTED: uncharacterized protein LOC105138897 isoform X3 [Populus euphratica]
4 Hb_003528_060 0.0975106428 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
5 Hb_013405_090 0.101564563 - - PREDICTED: uncharacterized protein LOC105648433 isoform X1 [Jatropha curcas]
6 Hb_003058_080 0.1034746575 - - Chaperonin 10 isoform 1 [Theobroma cacao]
7 Hb_129924_010 0.1077705442 - - PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
8 Hb_011004_080 0.1082337407 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
9 Hb_001459_080 0.109478207 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
10 Hb_002783_270 0.1097983107 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
11 Hb_000012_220 0.1098476185 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005322_040 0.1107577345 - - 60S ribosomal protein L9, putative [Ricinus communis]
13 Hb_004787_060 0.1119614573 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
14 Hb_012753_230 0.11459389 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
15 Hb_009486_150 0.1148222041 - - 60S ribosomal protein L37a-2 [Medicago truncatula]
16 Hb_004052_020 0.1150324106 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
17 Hb_000260_550 0.1170572248 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
18 Hb_003894_070 0.117769651 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
19 Hb_168878_010 0.1194949059 - - 60S ribosomal protein L32A [Hevea brasiliensis]
20 Hb_001143_220 0.1206728911 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_047823_010 Hb_047823_010 Hb_007044_130 Hb_007044_130 Hb_047823_010--Hb_007044_130 Hb_002301_130 Hb_002301_130 Hb_047823_010--Hb_002301_130 Hb_003528_060 Hb_003528_060 Hb_047823_010--Hb_003528_060 Hb_013405_090 Hb_013405_090 Hb_047823_010--Hb_013405_090 Hb_003058_080 Hb_003058_080 Hb_047823_010--Hb_003058_080 Hb_129924_010 Hb_129924_010 Hb_047823_010--Hb_129924_010 Hb_002783_270 Hb_002783_270 Hb_007044_130--Hb_002783_270 Hb_001141_140 Hb_001141_140 Hb_007044_130--Hb_001141_140 Hb_000260_550 Hb_000260_550 Hb_007044_130--Hb_000260_550 Hb_000062_650 Hb_000062_650 Hb_007044_130--Hb_000062_650 Hb_003894_070 Hb_003894_070 Hb_007044_130--Hb_003894_070 Hb_006925_040 Hb_006925_040 Hb_007044_130--Hb_006925_040 Hb_011004_080 Hb_011004_080 Hb_002301_130--Hb_011004_080 Hb_009486_150 Hb_009486_150 Hb_002301_130--Hb_009486_150 Hb_000331_640 Hb_000331_640 Hb_002301_130--Hb_000331_640 Hb_002301_130--Hb_000062_650 Hb_002301_130--Hb_007044_130 Hb_012573_070 Hb_012573_070 Hb_003528_060--Hb_012573_070 Hb_001538_120 Hb_001538_120 Hb_003528_060--Hb_001538_120 Hb_003927_140 Hb_003927_140 Hb_003528_060--Hb_003927_140 Hb_003528_060--Hb_013405_090 Hb_182305_020 Hb_182305_020 Hb_003528_060--Hb_182305_020 Hb_001818_020 Hb_001818_020 Hb_003528_060--Hb_001818_020 Hb_013405_090--Hb_001538_120 Hb_005322_040 Hb_005322_040 Hb_013405_090--Hb_005322_040 Hb_000012_220 Hb_000012_220 Hb_013405_090--Hb_000012_220 Hb_010261_060 Hb_010261_060 Hb_013405_090--Hb_010261_060 Hb_013405_090--Hb_129924_010 Hb_003058_080--Hb_002783_270 Hb_003058_080--Hb_007044_130 Hb_004052_020 Hb_004052_020 Hb_003058_080--Hb_004052_020 Hb_012753_230 Hb_012753_230 Hb_003058_080--Hb_012753_230 Hb_000046_560 Hb_000046_560 Hb_003058_080--Hb_000046_560 Hb_002259_070 Hb_002259_070 Hb_129924_010--Hb_002259_070 Hb_129924_010--Hb_001538_120 Hb_129924_010--Hb_003528_060 Hb_003683_110 Hb_003683_110 Hb_129924_010--Hb_003683_110 Hb_129924_010--Hb_012753_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.5106 13.52 51.5065 24.5624 54.7489 40.3795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.913 161.555 27.3508 23.3889 13.7096

CAGE analysis