Hb_047833_010

Information

Type -
Description -
Location Contig47833: 57-455
Sequence    

Annotation

kegg
ID rcu:RCOM_1314170
description hypothetical protein
nr
ID ACV50436.1
description Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
swissprot
ID -
description -
trembl
ID D3GC10
description Avr9/Cf-9 rapidly elicited protein OS=Jatropha curcas GN=ACRE PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047833_010 0.0 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
2 Hb_002097_150 0.0978905987 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
3 Hb_000142_010 0.1539319883 - - PREDICTED: uncharacterized protein LOC105632779 [Jatropha curcas]
4 Hb_000563_460 0.1607259316 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
5 Hb_002311_490 0.1613383085 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
6 Hb_003053_060 0.1622464728 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
7 Hb_011671_290 0.163749586 transcription factor TF Family: ERF hypothetical protein JCGZ_26299 [Jatropha curcas]
8 Hb_158123_010 0.1671935378 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
9 Hb_001025_070 0.1672754382 - - Stachyose synthase precursor, putative [Ricinus communis]
10 Hb_000414_100 0.1680727542 - - PREDICTED: uncharacterized protein LOC105643784 [Jatropha curcas]
11 Hb_174829_040 0.1698868401 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
12 Hb_000610_030 0.1741174868 - - hypothetical protein MIMGU_mgv1a0038491mg, partial [Erythranthe guttata]
13 Hb_027214_060 0.1766815333 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
14 Hb_006483_050 0.177756269 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
15 Hb_003023_060 0.1793573281 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
16 Hb_000316_150 0.1802027072 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
17 Hb_000465_330 0.1807680414 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
18 Hb_002572_060 0.1838795757 - - conserved hypothetical protein [Ricinus communis]
19 Hb_147137_020 0.1846156757 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
20 Hb_000210_150 0.1877265548 - - PREDICTED: protein YLS9-like [Jatropha curcas]

Gene co-expression network

sample Hb_047833_010 Hb_047833_010 Hb_002097_150 Hb_002097_150 Hb_047833_010--Hb_002097_150 Hb_000142_010 Hb_000142_010 Hb_047833_010--Hb_000142_010 Hb_000563_460 Hb_000563_460 Hb_047833_010--Hb_000563_460 Hb_002311_490 Hb_002311_490 Hb_047833_010--Hb_002311_490 Hb_003053_060 Hb_003053_060 Hb_047833_010--Hb_003053_060 Hb_011671_290 Hb_011671_290 Hb_047833_010--Hb_011671_290 Hb_147137_020 Hb_147137_020 Hb_002097_150--Hb_147137_020 Hb_027214_060 Hb_027214_060 Hb_002097_150--Hb_027214_060 Hb_004157_080 Hb_004157_080 Hb_002097_150--Hb_004157_080 Hb_001025_070 Hb_001025_070 Hb_002097_150--Hb_001025_070 Hb_143232_020 Hb_143232_020 Hb_002097_150--Hb_143232_020 Hb_174829_040 Hb_174829_040 Hb_000142_010--Hb_174829_040 Hb_002042_190 Hb_002042_190 Hb_000142_010--Hb_002042_190 Hb_116349_050 Hb_116349_050 Hb_000142_010--Hb_116349_050 Hb_000142_010--Hb_002311_490 Hb_011416_020 Hb_011416_020 Hb_000142_010--Hb_011416_020 Hb_000142_010--Hb_003053_060 Hb_000563_460--Hb_002311_490 Hb_000016_220 Hb_000016_220 Hb_000563_460--Hb_000016_220 Hb_000563_460--Hb_011671_290 Hb_009247_020 Hb_009247_020 Hb_000563_460--Hb_009247_020 Hb_073870_020 Hb_073870_020 Hb_000563_460--Hb_073870_020 Hb_000506_140 Hb_000506_140 Hb_000563_460--Hb_000506_140 Hb_002311_490--Hb_000506_140 Hb_158123_010 Hb_158123_010 Hb_002311_490--Hb_158123_010 Hb_002311_490--Hb_174829_040 Hb_000465_330 Hb_000465_330 Hb_002311_490--Hb_000465_330 Hb_035391_010 Hb_035391_010 Hb_002311_490--Hb_035391_010 Hb_015978_030 Hb_015978_030 Hb_003053_060--Hb_015978_030 Hb_003053_060--Hb_174829_040 Hb_004324_290 Hb_004324_290 Hb_003053_060--Hb_004324_290 Hb_002835_260 Hb_002835_260 Hb_003053_060--Hb_002835_260 Hb_136886_010 Hb_136886_010 Hb_003053_060--Hb_136886_010 Hb_000610_030 Hb_000610_030 Hb_011671_290--Hb_000610_030 Hb_002572_060 Hb_002572_060 Hb_011671_290--Hb_002572_060 Hb_008931_020 Hb_008931_020 Hb_011671_290--Hb_008931_020 Hb_000959_290 Hb_000959_290 Hb_011671_290--Hb_000959_290 Hb_000414_100 Hb_000414_100 Hb_011671_290--Hb_000414_100 Hb_004994_070 Hb_004994_070 Hb_011671_290--Hb_004994_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.838174 109.356 6.55189 11.6213 0.343103 0.68765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14674 5.12336 0 0 1.49942

CAGE analysis