Hb_047923_030

Information

Type -
Description -
Location Contig47923: 12478-17021
Sequence    

Annotation

kegg
ID mtr:MTR_4g103910
description hypothetical protein
nr
ID KDP34893.1
description hypothetical protein JCGZ_09181 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09181 PE=4 SV=1
Gene Ontology
ID GO:0003824
description polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047923_030 0.0 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
2 Hb_002576_010 0.0212049683 - - -
3 Hb_134377_070 0.0583937808 - - -
4 Hb_000142_090 0.0672205888 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
5 Hb_181013_010 0.0723056695 - - PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
6 Hb_159124_010 0.0741653355 - - PREDICTED: uncharacterized protein LOC103332224 [Prunus mume]
7 Hb_005432_020 0.0786198275 - - -
8 Hb_099878_040 0.0802510879 - - PREDICTED: uncharacterized protein LOC102703670 [Oryza brachyantha]
9 Hb_101034_010 0.0845776937 - - -
10 Hb_000975_060 0.0871112433 - - -
11 Hb_006120_160 0.0915681541 - - -
12 Hb_004445_030 0.1087595016 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000248_020 0.1094621266 - - PREDICTED: uncharacterized protein LOC104243878 [Nicotiana sylvestris]
14 Hb_056506_080 0.1161871649 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
15 Hb_094694_010 0.1197945151 - - -
16 Hb_054127_020 0.1352657251 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
17 Hb_179183_010 0.1456235477 - - RALF-LIKE 32 family protein [Populus trichocarpa]
18 Hb_001174_050 0.1474306506 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_039547_010 0.156095461 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
20 Hb_000916_010 0.1569072689 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]

Gene co-expression network

sample Hb_047923_030 Hb_047923_030 Hb_002576_010 Hb_002576_010 Hb_047923_030--Hb_002576_010 Hb_134377_070 Hb_134377_070 Hb_047923_030--Hb_134377_070 Hb_000142_090 Hb_000142_090 Hb_047923_030--Hb_000142_090 Hb_181013_010 Hb_181013_010 Hb_047923_030--Hb_181013_010 Hb_159124_010 Hb_159124_010 Hb_047923_030--Hb_159124_010 Hb_005432_020 Hb_005432_020 Hb_047923_030--Hb_005432_020 Hb_002576_010--Hb_134377_070 Hb_002576_010--Hb_000142_090 Hb_002576_010--Hb_181013_010 Hb_002576_010--Hb_005432_020 Hb_002576_010--Hb_159124_010 Hb_134377_070--Hb_000142_090 Hb_134377_070--Hb_181013_010 Hb_134377_070--Hb_005432_020 Hb_101034_010 Hb_101034_010 Hb_134377_070--Hb_101034_010 Hb_134377_070--Hb_159124_010 Hb_006120_160 Hb_006120_160 Hb_134377_070--Hb_006120_160 Hb_000142_090--Hb_181013_010 Hb_000142_090--Hb_005432_020 Hb_000142_090--Hb_101034_010 Hb_000142_090--Hb_006120_160 Hb_000142_090--Hb_159124_010 Hb_181013_010--Hb_005432_020 Hb_181013_010--Hb_101034_010 Hb_181013_010--Hb_006120_160 Hb_181013_010--Hb_159124_010 Hb_159124_010--Hb_005432_020 Hb_159124_010--Hb_101034_010 Hb_159124_010--Hb_006120_160 Hb_005432_020--Hb_101034_010 Hb_005432_020--Hb_006120_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0267333 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.019211 0.15118

CAGE analysis