Hb_047955_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig47955: 15776-16799
Sequence    

Annotation

kegg
ID pop:POPTR_0019s14130g
description POPTRDRAFT_574574; hypothetical protein
nr
ID XP_012087685.1
description PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
swissprot
ID Q7XBH4
description Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2
trembl
ID A0A067JXL7
description MYB family protein OS=Jatropha curcas GN=JCGZ_26464 PE=4 SV=1
Gene Ontology
ID GO:0005488
description myb-related protein myb4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047955_010 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
2 Hb_000032_150 0.0493977426 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
3 Hb_003207_230 0.0809515106 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
4 Hb_000359_230 0.084432016 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
5 Hb_124953_010 0.0849083673 - - hypothetical protein RCOM_1314600 [Ricinus communis]
6 Hb_002252_030 0.0850606928 - - hypothetical protein JCGZ_06771 [Jatropha curcas]
7 Hb_157957_010 0.0853881951 - - hypothetical protein JCGZ_10722 [Jatropha curcas]
8 Hb_002548_030 0.0859957245 - - PREDICTED: uncharacterized protein LOC103343650 [Prunus mume]
9 Hb_027506_060 0.089747443 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
10 Hb_110356_010 0.0934312908 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
11 Hb_001257_040 0.1007140152 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
12 Hb_004032_220 0.102277239 - - Calmodulin, putative [Ricinus communis]
13 Hb_106810_010 0.1026969431 - - receptor serine/threonine kinase, putative [Ricinus communis]
14 Hb_034581_010 0.1049020311 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
15 Hb_007858_020 0.1049914179 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
16 Hb_005618_020 0.1058473917 - - hypothetical protein RCOM_1342750 [Ricinus communis]
17 Hb_167186_010 0.1083955051 - - cation-transporting atpase plant, putative [Ricinus communis]
18 Hb_034642_010 0.1097548515 - - PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
19 Hb_005054_330 0.1130190496 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
20 Hb_000836_310 0.1131551561 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 30 [Jatropha curcas]

Gene co-expression network

sample Hb_047955_010 Hb_047955_010 Hb_000032_150 Hb_000032_150 Hb_047955_010--Hb_000032_150 Hb_003207_230 Hb_003207_230 Hb_047955_010--Hb_003207_230 Hb_000359_230 Hb_000359_230 Hb_047955_010--Hb_000359_230 Hb_124953_010 Hb_124953_010 Hb_047955_010--Hb_124953_010 Hb_002252_030 Hb_002252_030 Hb_047955_010--Hb_002252_030 Hb_157957_010 Hb_157957_010 Hb_047955_010--Hb_157957_010 Hb_000032_150--Hb_124953_010 Hb_001257_040 Hb_001257_040 Hb_000032_150--Hb_001257_040 Hb_000032_150--Hb_003207_230 Hb_007858_020 Hb_007858_020 Hb_000032_150--Hb_007858_020 Hb_004032_220 Hb_004032_220 Hb_000032_150--Hb_004032_220 Hb_003207_230--Hb_124953_010 Hb_099188_010 Hb_099188_010 Hb_003207_230--Hb_099188_010 Hb_005054_330 Hb_005054_330 Hb_003207_230--Hb_005054_330 Hb_003207_230--Hb_000359_230 Hb_002548_030 Hb_002548_030 Hb_000359_230--Hb_002548_030 Hb_110356_010 Hb_110356_010 Hb_000359_230--Hb_110356_010 Hb_000359_230--Hb_099188_010 Hb_034581_010 Hb_034581_010 Hb_000359_230--Hb_034581_010 Hb_001677_140 Hb_001677_140 Hb_000359_230--Hb_001677_140 Hb_128851_020 Hb_128851_020 Hb_000359_230--Hb_128851_020 Hb_124953_010--Hb_007858_020 Hb_124953_010--Hb_005054_330 Hb_124953_010--Hb_004032_220 Hb_002252_030--Hb_157957_010 Hb_002252_030--Hb_000359_230 Hb_002252_030--Hb_002548_030 Hb_010477_020 Hb_010477_020 Hb_002252_030--Hb_010477_020 Hb_002252_030--Hb_034581_010 Hb_157957_010--Hb_034581_010 Hb_036754_040 Hb_036754_040 Hb_157957_010--Hb_036754_040 Hb_157957_010--Hb_110356_010 Hb_157957_010--Hb_000359_230 Hb_157957_010--Hb_002548_030 Hb_064692_010 Hb_064692_010 Hb_157957_010--Hb_064692_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 32.0103 12.7467 5.66962 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.22228 0.201612

CAGE analysis