Hb_048183_010

Information

Type -
Description -
Location Contig48183: 989-1108
Sequence    

Annotation

kegg
ID rcu:RCOM_1409980
description nicotinate phosphoribosyltransferase, putative
nr
ID XP_002523612.1
description nicotinate phosphoribosyltransferase, putative [Ricinus communis]
swissprot
ID Q84WV8
description Nicotinate phosphoribosyltransferase 2 OS=Arabidopsis thaliana GN=NAPRT2 PE=2 SV=1
trembl
ID B9SC93
description Nicotinate phosphoribosyltransferase, putative OS=Ricinus communis GN=RCOM_1409980 PE=4 SV=1
Gene Ontology
ID GO:0004514
description nicotinate phosphoribosyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048183_010 0.0 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
2 Hb_007416_080 0.1629791154 - - -
3 Hb_133648_010 0.169313175 - - -
4 Hb_072290_010 0.1765152711 - - PREDICTED: GRF1-interacting factor 1 [Gossypium raimondii]
5 Hb_001708_010 0.2080998201 - - PREDICTED: putative disease resistance protein At4g11170 [Malus domestica]
6 Hb_178711_010 0.2119995732 - - hypothetical protein PHAVU_003G094000g [Phaseolus vulgaris]
7 Hb_000164_130 0.2146066233 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
8 Hb_158296_010 0.2152323892 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
9 Hb_000562_010 0.2298143616 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
10 Hb_002984_030 0.2367721154 - - -
11 Hb_007441_090 0.2382845682 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
12 Hb_004705_090 0.2450426785 - - conserved hypothetical protein [Ricinus communis]
13 Hb_157968_010 0.2456700474 - - Disease resistance protein RPS5, putative [Ricinus communis]
14 Hb_104169_010 0.2459620053 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
15 Hb_029622_070 0.245990027 - - -
16 Hb_022614_010 0.2493346891 - - -
17 Hb_162090_010 0.2530282751 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
18 Hb_003531_010 0.2566537487 - - scab resistance family protein [Populus trichocarpa]
19 Hb_148658_010 0.2587973042 - - -
20 Hb_004525_080 0.2635847213 - - Sugar transporter ERD6-like 6 [Morus notabilis]

Gene co-expression network

sample Hb_048183_010 Hb_048183_010 Hb_007416_080 Hb_007416_080 Hb_048183_010--Hb_007416_080 Hb_133648_010 Hb_133648_010 Hb_048183_010--Hb_133648_010 Hb_072290_010 Hb_072290_010 Hb_048183_010--Hb_072290_010 Hb_001708_010 Hb_001708_010 Hb_048183_010--Hb_001708_010 Hb_178711_010 Hb_178711_010 Hb_048183_010--Hb_178711_010 Hb_000164_130 Hb_000164_130 Hb_048183_010--Hb_000164_130 Hb_000562_010 Hb_000562_010 Hb_007416_080--Hb_000562_010 Hb_158296_010 Hb_158296_010 Hb_007416_080--Hb_158296_010 Hb_007416_080--Hb_133648_010 Hb_007416_080--Hb_000164_130 Hb_001208_020 Hb_001208_020 Hb_007416_080--Hb_001208_020 Hb_133648_010--Hb_158296_010 Hb_097783_010 Hb_097783_010 Hb_133648_010--Hb_097783_010 Hb_133648_010--Hb_000562_010 Hb_133648_010--Hb_072290_010 Hb_104169_010 Hb_104169_010 Hb_072290_010--Hb_104169_010 Hb_004705_090 Hb_004705_090 Hb_072290_010--Hb_004705_090 Hb_002984_020 Hb_002984_020 Hb_072290_010--Hb_002984_020 Hb_072290_010--Hb_178711_010 Hb_007441_090 Hb_007441_090 Hb_001708_010--Hb_007441_090 Hb_106688_010 Hb_106688_010 Hb_001708_010--Hb_106688_010 Hb_114079_010 Hb_114079_010 Hb_001708_010--Hb_114079_010 Hb_003740_040 Hb_003740_040 Hb_001708_010--Hb_003740_040 Hb_157968_010 Hb_157968_010 Hb_001708_010--Hb_157968_010 Hb_029622_070 Hb_029622_070 Hb_178711_010--Hb_029622_070 Hb_003531_010 Hb_003531_010 Hb_178711_010--Hb_003531_010 Hb_003925_130 Hb_003925_130 Hb_178711_010--Hb_003925_130 Hb_000304_040 Hb_000304_040 Hb_178711_010--Hb_000304_040 Hb_002081_180 Hb_002081_180 Hb_178711_010--Hb_002081_180 Hb_000164_130--Hb_000562_010 Hb_000164_130--Hb_158296_010 Hb_000164_130--Hb_133648_010 Hb_000164_130--Hb_001208_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3262.05 1290.1 11213.1 357.706 4552.36
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
139.446 127.819 105.608 431.474 0

CAGE analysis