Hb_048197_010

Information

Type -
Description -
Location Contig48197: 565-1500
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048197_010 0.0 - - -
2 Hb_036369_010 0.1370341165 - - -
3 Hb_170305_020 0.1405270167 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
4 Hb_001248_020 0.1602740305 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
5 Hb_002821_010 0.1661416795 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
6 Hb_077562_040 0.1709539041 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
7 Hb_023675_010 0.1739634921 - - -
8 Hb_000366_100 0.1776083185 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
9 Hb_004116_110 0.1784143298 - - hypothetical protein MTR_3g064100 [Medicago truncatula]
10 Hb_003057_130 0.1805534353 - - -
11 Hb_012395_100 0.1821415523 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
12 Hb_005690_020 0.184658097 - - hypothetical protein POPTR_0006s08200g [Populus trichocarpa]
13 Hb_003398_060 0.1936781718 - - PREDICTED: rRNA methyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_073973_110 0.1940829852 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
15 Hb_025246_010 0.1944925214 - - -
16 Hb_027472_090 0.1955911156 - - -
17 Hb_001821_120 0.1973096126 - - PREDICTED: uncharacterized protein LOC105643956 [Jatropha curcas]
18 Hb_000563_530 0.2011811582 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
19 Hb_001488_110 0.2016560141 - - -
20 Hb_002918_280 0.2016892899 - - hypothetical protein POPTR_0004s04800g [Populus trichocarpa]

Gene co-expression network

sample Hb_048197_010 Hb_048197_010 Hb_036369_010 Hb_036369_010 Hb_048197_010--Hb_036369_010 Hb_170305_020 Hb_170305_020 Hb_048197_010--Hb_170305_020 Hb_001248_020 Hb_001248_020 Hb_048197_010--Hb_001248_020 Hb_002821_010 Hb_002821_010 Hb_048197_010--Hb_002821_010 Hb_077562_040 Hb_077562_040 Hb_048197_010--Hb_077562_040 Hb_023675_010 Hb_023675_010 Hb_048197_010--Hb_023675_010 Hb_036369_010--Hb_001248_020 Hb_000366_100 Hb_000366_100 Hb_036369_010--Hb_000366_100 Hb_036369_010--Hb_023675_010 Hb_036369_010--Hb_170305_020 Hb_003398_060 Hb_003398_060 Hb_036369_010--Hb_003398_060 Hb_025246_010 Hb_025246_010 Hb_036369_010--Hb_025246_010 Hb_170305_020--Hb_000366_100 Hb_000617_320 Hb_000617_320 Hb_170305_020--Hb_000617_320 Hb_007632_250 Hb_007632_250 Hb_170305_020--Hb_007632_250 Hb_170305_020--Hb_001248_020 Hb_012395_100 Hb_012395_100 Hb_170305_020--Hb_012395_100 Hb_001248_020--Hb_003398_060 Hb_001248_020--Hb_025246_010 Hb_001248_020--Hb_012395_100 Hb_001248_020--Hb_023675_010 Hb_004852_020 Hb_004852_020 Hb_001248_020--Hb_004852_020 Hb_120221_010 Hb_120221_010 Hb_002821_010--Hb_120221_010 Hb_000381_080 Hb_000381_080 Hb_002821_010--Hb_000381_080 Hb_084934_010 Hb_084934_010 Hb_002821_010--Hb_084934_010 Hb_027472_090 Hb_027472_090 Hb_002821_010--Hb_027472_090 Hb_002821_010--Hb_170305_020 Hb_002821_010--Hb_000366_100 Hb_000184_120 Hb_000184_120 Hb_077562_040--Hb_000184_120 Hb_077562_040--Hb_023675_010 Hb_004025_030 Hb_004025_030 Hb_077562_040--Hb_004025_030 Hb_000563_530 Hb_000563_530 Hb_077562_040--Hb_000563_530 Hb_077562_040--Hb_000366_100 Hb_001488_110 Hb_001488_110 Hb_077562_040--Hb_001488_110 Hb_023675_010--Hb_000366_100 Hb_023675_010--Hb_004852_020 Hb_023675_010--Hb_012395_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.75105 0.310718 0 0 1.15675 2.66197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.78988 2.97402 0.250518 0.603622 0

CAGE analysis