Hb_048219_010

Information

Type -
Description -
Location Contig48219: 585-1082
Sequence    

Annotation

kegg
ID tcc:TCM_042602
description RNI-like superfamily protein
nr
ID ABV72393.1
description coronatine-insensitive 1 [Hevea brasiliensis]
swissprot
ID O04197
description Coronatine-insensitive protein 1 OS=Arabidopsis thaliana GN=COI1 PE=1 SV=1
trembl
ID A8HSC8
description Coronatine-insensitive 1 OS=Hevea brasiliensis GN=COI1 PE=2 SV=1
Gene Ontology
ID GO:0019005
description coronatine-insensitive protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048219_010 0.0 - - coronatine-insensitive 1 [Hevea brasiliensis]
2 Hb_012564_030 0.0562762887 - - coronatine-insensitive 1 [Hevea brasiliensis]
3 Hb_004767_050 0.0639856935 - - PREDICTED: glycosyltransferase family protein 64 C3-like [Jatropha curcas]
4 Hb_001818_070 0.0672161257 - - carbon catabolite repressor protein, putative [Ricinus communis]
5 Hb_001856_230 0.0720646093 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
6 Hb_003544_110 0.0765533649 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
7 Hb_011491_010 0.0769817693 - - Protein YME1, putative [Ricinus communis]
8 Hb_015807_070 0.0800702384 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
9 Hb_000181_070 0.0810473096 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000331_670 0.0816930728 - - PREDICTED: protein tipD [Jatropha curcas]
11 Hb_007416_180 0.0840220041 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
12 Hb_000140_230 0.085446507 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
13 Hb_000866_120 0.0884134926 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
14 Hb_140506_010 0.0886848855 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Jatropha curcas]
15 Hb_007532_030 0.0896793401 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
16 Hb_004109_030 0.0898037693 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001213_050 0.0904015817 - - PREDICTED: uncharacterized protein LOC105646665 isoform X1 [Jatropha curcas]
18 Hb_000204_210 0.0904052424 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
19 Hb_168697_010 0.0908423289 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
20 Hb_000334_220 0.090955387 - - hypothetical protein JCGZ_16772 [Jatropha curcas]

Gene co-expression network

sample Hb_048219_010 Hb_048219_010 Hb_012564_030 Hb_012564_030 Hb_048219_010--Hb_012564_030 Hb_004767_050 Hb_004767_050 Hb_048219_010--Hb_004767_050 Hb_001818_070 Hb_001818_070 Hb_048219_010--Hb_001818_070 Hb_001856_230 Hb_001856_230 Hb_048219_010--Hb_001856_230 Hb_003544_110 Hb_003544_110 Hb_048219_010--Hb_003544_110 Hb_011491_010 Hb_011491_010 Hb_048219_010--Hb_011491_010 Hb_012564_030--Hb_001856_230 Hb_005016_160 Hb_005016_160 Hb_012564_030--Hb_005016_160 Hb_012564_030--Hb_003544_110 Hb_000331_670 Hb_000331_670 Hb_012564_030--Hb_000331_670 Hb_012055_060 Hb_012055_060 Hb_012564_030--Hb_012055_060 Hb_004767_050--Hb_001818_070 Hb_000592_090 Hb_000592_090 Hb_004767_050--Hb_000592_090 Hb_003467_020 Hb_003467_020 Hb_004767_050--Hb_003467_020 Hb_004767_050--Hb_011491_010 Hb_140506_010 Hb_140506_010 Hb_004767_050--Hb_140506_010 Hb_001818_070--Hb_140506_010 Hb_001838_060 Hb_001838_060 Hb_001818_070--Hb_001838_060 Hb_001818_070--Hb_011491_010 Hb_003211_020 Hb_003211_020 Hb_001818_070--Hb_003211_020 Hb_001856_230--Hb_003544_110 Hb_007532_030 Hb_007532_030 Hb_001856_230--Hb_007532_030 Hb_001856_230--Hb_000331_670 Hb_002374_310 Hb_002374_310 Hb_001856_230--Hb_002374_310 Hb_001366_310 Hb_001366_310 Hb_003544_110--Hb_001366_310 Hb_002818_030 Hb_002818_030 Hb_003544_110--Hb_002818_030 Hb_003494_020 Hb_003494_020 Hb_003544_110--Hb_003494_020 Hb_004916_010 Hb_004916_010 Hb_003544_110--Hb_004916_010 Hb_001005_190 Hb_001005_190 Hb_011491_010--Hb_001005_190 Hb_001828_130 Hb_001828_130 Hb_011491_010--Hb_001828_130 Hb_007163_120 Hb_007163_120 Hb_011491_010--Hb_007163_120 Hb_000243_250 Hb_000243_250 Hb_011491_010--Hb_000243_250 Hb_000092_020 Hb_000092_020 Hb_011491_010--Hb_000092_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.4411 90.6972 24.21 43.1739 44.4176 63.8798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.1791 50.3083 82.4625 39.107 33.3042

CAGE analysis