Hb_048476_010

Information

Type -
Description -
Location Contig48476: 277-6429
Sequence    

Annotation

kegg
ID cit:102611483
description RNA-dependent RNA polymerase 1-like
nr
ID XP_006477791.1
description PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID I1P413
description Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1
Gene Ontology
ID GO:0016779
description probable rna-dependent rna polymerase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048476_010 0.0 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Citrus sinensis]
2 Hb_002072_020 0.1500523275 - - hypothetical protein JCGZ_16057 [Jatropha curcas]
3 Hb_027634_010 0.1694605656 - - protein binding protein, putative [Ricinus communis]
4 Hb_001921_020 0.171250251 desease resistance Gene Name: LRR_8 PREDICTED: disease resistance protein RPM1-like isoform X2 [Jatropha curcas]
5 Hb_001640_020 0.1723471448 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
6 Hb_001959_030 0.1762620029 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004122_030 0.1790153684 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
8 Hb_000175_480 0.1839464809 - - hypothetical protein JCGZ_06165 [Jatropha curcas]
9 Hb_002843_010 0.1890339458 - - hypothetical protein EUGRSUZ_H04984, partial [Eucalyptus grandis]
10 Hb_002042_200 0.1943377818 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
11 Hb_000003_510 0.1964347928 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
12 Hb_007163_020 0.2013069737 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
13 Hb_010175_060 0.2061120835 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007328_040 0.2062034972 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X2 [Nelumbo nucifera]
15 Hb_000976_440 0.2080960066 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_001369_620 0.2092850359 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
17 Hb_006588_030 0.2134832157 - - PREDICTED: cytochrome P450 CYP72A219-like [Jatropha curcas]
18 Hb_025254_020 0.2141591362 - - PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]
19 Hb_003025_010 0.2169838684 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X2 [Populus euphratica]
20 Hb_005663_050 0.2187784321 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_048476_010 Hb_048476_010 Hb_002072_020 Hb_002072_020 Hb_048476_010--Hb_002072_020 Hb_027634_010 Hb_027634_010 Hb_048476_010--Hb_027634_010 Hb_001921_020 Hb_001921_020 Hb_048476_010--Hb_001921_020 Hb_001640_020 Hb_001640_020 Hb_048476_010--Hb_001640_020 Hb_001959_030 Hb_001959_030 Hb_048476_010--Hb_001959_030 Hb_004122_030 Hb_004122_030 Hb_048476_010--Hb_004122_030 Hb_000003_510 Hb_000003_510 Hb_002072_020--Hb_000003_510 Hb_000976_440 Hb_000976_440 Hb_002072_020--Hb_000976_440 Hb_032050_050 Hb_032050_050 Hb_002072_020--Hb_032050_050 Hb_000077_330 Hb_000077_330 Hb_002072_020--Hb_000077_330 Hb_009823_010 Hb_009823_010 Hb_002072_020--Hb_009823_010 Hb_000175_480 Hb_000175_480 Hb_027634_010--Hb_000175_480 Hb_002042_200 Hb_002042_200 Hb_027634_010--Hb_002042_200 Hb_001623_400 Hb_001623_400 Hb_027634_010--Hb_001623_400 Hb_018133_110 Hb_018133_110 Hb_027634_010--Hb_018133_110 Hb_027634_010--Hb_001959_030 Hb_027634_010--Hb_004122_030 Hb_002374_110 Hb_002374_110 Hb_001921_020--Hb_002374_110 Hb_002843_010 Hb_002843_010 Hb_001921_020--Hb_002843_010 Hb_127743_030 Hb_127743_030 Hb_001921_020--Hb_127743_030 Hb_001723_070 Hb_001723_070 Hb_001921_020--Hb_001723_070 Hb_007432_050 Hb_007432_050 Hb_001921_020--Hb_007432_050 Hb_007163_020 Hb_007163_020 Hb_001640_020--Hb_007163_020 Hb_007328_040 Hb_007328_040 Hb_001640_020--Hb_007328_040 Hb_000057_010 Hb_000057_010 Hb_001640_020--Hb_000057_010 Hb_004136_050 Hb_004136_050 Hb_001640_020--Hb_004136_050 Hb_005663_050 Hb_005663_050 Hb_001640_020--Hb_005663_050 Hb_001640_020--Hb_002843_010 Hb_001959_030--Hb_002042_200 Hb_025254_020 Hb_025254_020 Hb_001959_030--Hb_025254_020 Hb_002016_020 Hb_002016_020 Hb_001959_030--Hb_002016_020 Hb_001959_030--Hb_018133_110 Hb_001369_620 Hb_001369_620 Hb_001959_030--Hb_001369_620 Hb_001959_030--Hb_000175_480 Hb_004122_030--Hb_002042_200 Hb_000099_020 Hb_000099_020 Hb_004122_030--Hb_000099_020 Hb_004122_030--Hb_001959_030 Hb_004122_030--Hb_001369_620 Hb_005237_070 Hb_005237_070 Hb_004122_030--Hb_005237_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.158441 0.551281 0.162434 0.594605 0 0.120549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.77284 0

CAGE analysis