Hb_048476_030

Information

Type -
Description -
Location Contig48476: 11867-17584
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11560g
description POPTRDRAFT_231683; hypothetical protein
nr
ID XP_002315849.2
description hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
swissprot
ID Q9LQV2
description RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1
trembl
ID B9HVU2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s11560g PE=4 SV=2
Gene Ontology
ID GO:0003676
description probable rna-dependent rna polymerase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44935: 15738-16095 , PASA_asmbl_44936: 16510-17085
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048476_030 0.0 - - hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
2 Hb_003582_090 0.1385738491 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
3 Hb_001195_660 0.1437547232 - - metalloendopeptidase, putative [Ricinus communis]
4 Hb_003847_040 0.1522416328 - - adenosine diphosphatase, putative [Ricinus communis]
5 Hb_000367_120 0.1557298371 transcription factor TF Family: C2H2 hypothetical protein RCOM_1470470 [Ricinus communis]
6 Hb_000025_540 0.1615815405 - - PREDICTED: uncharacterized protein LOC104879644 [Vitis vinifera]
7 Hb_000120_530 0.161729245 transcription factor TF Family: C3H RING finger protein 113A, putative [Ricinus communis]
8 Hb_002028_110 0.1637481897 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
9 Hb_000046_480 0.1637602542 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
10 Hb_001017_130 0.1646589596 - - hypothetical protein POPTR_0010s06070g [Populus trichocarpa]
11 Hb_001433_150 0.167194475 - - conserved hypothetical protein [Ricinus communis]
12 Hb_026549_070 0.1672445927 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
13 Hb_000000_310 0.1682727868 - - metalloendopeptidase, putative [Ricinus communis]
14 Hb_000270_660 0.1724236601 - - purine permease, putative [Ricinus communis]
15 Hb_000414_080 0.1731000697 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
16 Hb_000139_300 0.1749067143 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
17 Hb_002028_180 0.1750654948 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
18 Hb_000684_390 0.176915735 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
19 Hb_021409_070 0.1785531833 - - PREDICTED: transcription factor bHLH157 isoform X1 [Jatropha curcas]
20 Hb_003994_080 0.1792107938 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]

Gene co-expression network

sample Hb_048476_030 Hb_048476_030 Hb_003582_090 Hb_003582_090 Hb_048476_030--Hb_003582_090 Hb_001195_660 Hb_001195_660 Hb_048476_030--Hb_001195_660 Hb_003847_040 Hb_003847_040 Hb_048476_030--Hb_003847_040 Hb_000367_120 Hb_000367_120 Hb_048476_030--Hb_000367_120 Hb_000025_540 Hb_000025_540 Hb_048476_030--Hb_000025_540 Hb_000120_530 Hb_000120_530 Hb_048476_030--Hb_000120_530 Hb_000445_370 Hb_000445_370 Hb_003582_090--Hb_000445_370 Hb_002675_080 Hb_002675_080 Hb_003582_090--Hb_002675_080 Hb_003582_090--Hb_001195_660 Hb_000042_050 Hb_000042_050 Hb_003582_090--Hb_000042_050 Hb_001053_020 Hb_001053_020 Hb_003582_090--Hb_001053_020 Hb_003582_090--Hb_003847_040 Hb_001195_660--Hb_003847_040 Hb_026549_070 Hb_026549_070 Hb_001195_660--Hb_026549_070 Hb_000283_140 Hb_000283_140 Hb_001195_660--Hb_000283_140 Hb_009079_050 Hb_009079_050 Hb_001195_660--Hb_009079_050 Hb_000139_300 Hb_000139_300 Hb_001195_660--Hb_000139_300 Hb_000638_060 Hb_000638_060 Hb_003847_040--Hb_000638_060 Hb_001411_130 Hb_001411_130 Hb_003847_040--Hb_001411_130 Hb_003847_040--Hb_026549_070 Hb_000959_300 Hb_000959_300 Hb_003847_040--Hb_000959_300 Hb_000414_080 Hb_000414_080 Hb_003847_040--Hb_000414_080 Hb_002097_100 Hb_002097_100 Hb_000367_120--Hb_002097_100 Hb_000367_120--Hb_026549_070 Hb_000367_120--Hb_003582_090 Hb_000367_120--Hb_001195_660 Hb_116702_010 Hb_116702_010 Hb_000367_120--Hb_116702_010 Hb_003994_080 Hb_003994_080 Hb_000025_540--Hb_003994_080 Hb_002783_190 Hb_002783_190 Hb_000025_540--Hb_002783_190 Hb_138585_030 Hb_138585_030 Hb_000025_540--Hb_138585_030 Hb_002627_040 Hb_002627_040 Hb_000025_540--Hb_002627_040 Hb_014497_010 Hb_014497_010 Hb_000025_540--Hb_014497_010 Hb_002687_160 Hb_002687_160 Hb_000025_540--Hb_002687_160 Hb_002603_040 Hb_002603_040 Hb_000120_530--Hb_002603_040 Hb_000138_060 Hb_000138_060 Hb_000120_530--Hb_000138_060 Hb_001969_140 Hb_001969_140 Hb_000120_530--Hb_001969_140 Hb_000997_070 Hb_000997_070 Hb_000120_530--Hb_000997_070 Hb_003540_080 Hb_003540_080 Hb_000120_530--Hb_003540_080 Hb_000120_530--Hb_001411_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.269952 0.416132 1.02604 1.22758 0.161358 0.0427936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.240531 0.0157743 0.42452 0.287311 1.26886

CAGE analysis