Hb_048476_100

Information

Type -
Description -
Location Contig48476: 62990-63961
Sequence    

Annotation

kegg
ID vvi:100250043
description glutathione S-transferase U9-like
nr
ID XP_010663865.1
description PREDICTED: glutathione S-transferase U9-like [Vitis vinifera]
swissprot
ID Q9CA57
description Glutathione S-transferase U10 OS=Arabidopsis thaliana GN=GSTU10 PE=2 SV=1
trembl
ID F6GT83
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g06140 PE=4 SV=1
Gene Ontology
ID GO:0008152
description glutathione s-transferase u9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44946: 61489-62516 , PASA_asmbl_44947: 63052-63944
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048476_100 0.0 - - PREDICTED: glutathione S-transferase U9-like [Vitis vinifera]
2 Hb_000329_270 0.1174141984 - - PREDICTED: spindle and kinetochore-associated protein 1 homolog [Jatropha curcas]
3 Hb_032717_020 0.1174986796 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2 isoform X1 [Jatropha curcas]
4 Hb_003849_130 0.1331129688 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
5 Hb_000803_200 0.1336929132 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
6 Hb_055062_020 0.1359154811 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
7 Hb_002374_080 0.1383894209 - - PREDICTED: chloroplast processing peptidase-like isoform X1 [Jatropha curcas]
8 Hb_006671_010 0.1414863116 - - PREDICTED: 5' exonuclease Apollo isoform X1 [Jatropha curcas]
9 Hb_000258_250 0.143385306 - - Origin recognition complex subunit, putative [Ricinus communis]
10 Hb_002228_070 0.1447609752 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
11 Hb_001511_260 0.1462982346 - - tryptophan biosynthesis protein, putative [Ricinus communis]
12 Hb_157022_010 0.1464840334 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
13 Hb_001073_080 0.147295675 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
14 Hb_003362_030 0.1502070768 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
15 Hb_004889_020 0.1539733456 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
16 Hb_000676_390 0.1543616424 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
17 Hb_000340_500 0.1550203835 - - PREDICTED: aldo-keto reductase-like [Jatropha curcas]
18 Hb_004041_020 0.156446431 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
19 Hb_002686_180 0.1595819987 - - PREDICTED: early nodulin-93-like [Populus euphratica]
20 Hb_000027_040 0.1603185589 - - PREDICTED: uncharacterized protein LOC105636980 [Jatropha curcas]

Gene co-expression network

sample Hb_048476_100 Hb_048476_100 Hb_000329_270 Hb_000329_270 Hb_048476_100--Hb_000329_270 Hb_032717_020 Hb_032717_020 Hb_048476_100--Hb_032717_020 Hb_003849_130 Hb_003849_130 Hb_048476_100--Hb_003849_130 Hb_000803_200 Hb_000803_200 Hb_048476_100--Hb_000803_200 Hb_055062_020 Hb_055062_020 Hb_048476_100--Hb_055062_020 Hb_002374_080 Hb_002374_080 Hb_048476_100--Hb_002374_080 Hb_000329_270--Hb_003849_130 Hb_000329_270--Hb_055062_020 Hb_000027_040 Hb_000027_040 Hb_000329_270--Hb_000027_040 Hb_000258_250 Hb_000258_250 Hb_000329_270--Hb_000258_250 Hb_000329_270--Hb_000803_200 Hb_002686_180 Hb_002686_180 Hb_032717_020--Hb_002686_180 Hb_032717_020--Hb_000329_270 Hb_000184_210 Hb_000184_210 Hb_032717_020--Hb_000184_210 Hb_032717_020--Hb_003849_130 Hb_000340_500 Hb_000340_500 Hb_032717_020--Hb_000340_500 Hb_003849_130--Hb_055062_020 Hb_003057_090 Hb_003057_090 Hb_003849_130--Hb_003057_090 Hb_000694_040 Hb_000694_040 Hb_003849_130--Hb_000694_040 Hb_010577_030 Hb_010577_030 Hb_003849_130--Hb_010577_030 Hb_004041_020 Hb_004041_020 Hb_003849_130--Hb_004041_020 Hb_002374_570 Hb_002374_570 Hb_003849_130--Hb_002374_570 Hb_000849_130 Hb_000849_130 Hb_000803_200--Hb_000849_130 Hb_006326_040 Hb_006326_040 Hb_000803_200--Hb_006326_040 Hb_000803_200--Hb_055062_020 Hb_001511_260 Hb_001511_260 Hb_000803_200--Hb_001511_260 Hb_007113_070 Hb_007113_070 Hb_000803_200--Hb_007113_070 Hb_000045_310 Hb_000045_310 Hb_000803_200--Hb_000045_310 Hb_000317_390 Hb_000317_390 Hb_055062_020--Hb_000317_390 Hb_000403_060 Hb_000403_060 Hb_055062_020--Hb_000403_060 Hb_001341_150 Hb_001341_150 Hb_055062_020--Hb_001341_150 Hb_000261_140 Hb_000261_140 Hb_055062_020--Hb_000261_140 Hb_026889_030 Hb_026889_030 Hb_055062_020--Hb_026889_030 Hb_006671_010 Hb_006671_010 Hb_002374_080--Hb_006671_010 Hb_005054_210 Hb_005054_210 Hb_002374_080--Hb_005054_210 Hb_000676_390 Hb_000676_390 Hb_002374_080--Hb_000676_390 Hb_003362_030 Hb_003362_030 Hb_002374_080--Hb_003362_030 Hb_002374_080--Hb_000803_200 Hb_000920_200 Hb_000920_200 Hb_002374_080--Hb_000920_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.4288 1.51208 17.466 7.3986 2.91606 6.60719
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.84524 16.4698 10.4388 4.46869 1.9004

CAGE analysis