Hb_048476_130

Information

Type -
Description -
Location Contig48476: 95030-97861
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11720g
description scab resistance family protein
nr
ID XP_002315907.2
description scab resistance family protein [Populus trichocarpa]
swissprot
ID Q9FL28
description LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1
trembl
ID B9HWB2
description Scab resistance family protein OS=Populus trichocarpa GN=POPTR_0010s11720g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048476_130 0.0 - - scab resistance family protein [Populus trichocarpa]
2 Hb_001059_110 0.1235866524 - - PREDICTED: uncharacterized protein LOC105649457 [Jatropha curcas]
3 Hb_003992_020 0.1266187392 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
4 Hb_005542_070 0.137906119 - - hypothetical protein ZEAMMB73_851878 [Zea mays]
5 Hb_012691_020 0.1436683692 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
6 Hb_002781_040 0.1541053531 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003893_180 0.1554675822 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
8 Hb_001989_030 0.1563059964 - - PREDICTED: copper transport protein ATX1 [Jatropha curcas]
9 Hb_002233_160 0.1590740305 - - PREDICTED: uncharacterized protein LOC105633094 [Jatropha curcas]
10 Hb_003050_020 0.1617312285 - - glycosyl hydrolase family 17 family protein [Populus trichocarpa]
11 Hb_001709_090 0.1618374768 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
12 Hb_003750_120 0.1652519798 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
13 Hb_050898_030 0.1664434678 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000679_250 0.1709800709 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
15 Hb_001153_040 0.1721569593 - - PREDICTED: uncharacterized protein LOC105128973 [Populus euphratica]
16 Hb_009252_080 0.1725823333 - - Polygalacturonase-1 non-catalytic subunit beta precursor, putative [Ricinus communis]
17 Hb_000375_260 0.1727287353 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]
18 Hb_001635_140 0.1728464145 - - protein with unknown function [Ricinus communis]
19 Hb_043552_010 0.1736709968 - - PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B isoform X1 [Jatropha curcas]
20 Hb_012368_050 0.1753303521 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_048476_130 Hb_048476_130 Hb_001059_110 Hb_001059_110 Hb_048476_130--Hb_001059_110 Hb_003992_020 Hb_003992_020 Hb_048476_130--Hb_003992_020 Hb_005542_070 Hb_005542_070 Hb_048476_130--Hb_005542_070 Hb_012691_020 Hb_012691_020 Hb_048476_130--Hb_012691_020 Hb_002781_040 Hb_002781_040 Hb_048476_130--Hb_002781_040 Hb_003893_180 Hb_003893_180 Hb_048476_130--Hb_003893_180 Hb_000742_290 Hb_000742_290 Hb_001059_110--Hb_000742_290 Hb_004531_130 Hb_004531_130 Hb_001059_110--Hb_004531_130 Hb_000085_410 Hb_000085_410 Hb_001059_110--Hb_000085_410 Hb_002026_050 Hb_002026_050 Hb_001059_110--Hb_002026_050 Hb_001059_110--Hb_003992_020 Hb_000329_720 Hb_000329_720 Hb_003992_020--Hb_000329_720 Hb_043552_010 Hb_043552_010 Hb_003992_020--Hb_043552_010 Hb_000375_260 Hb_000375_260 Hb_003992_020--Hb_000375_260 Hb_003935_040 Hb_003935_040 Hb_003992_020--Hb_003935_040 Hb_000005_360 Hb_000005_360 Hb_003992_020--Hb_000005_360 Hb_009252_080 Hb_009252_080 Hb_003992_020--Hb_009252_080 Hb_005542_070--Hb_002781_040 Hb_012368_050 Hb_012368_050 Hb_005542_070--Hb_012368_050 Hb_002233_160 Hb_002233_160 Hb_005542_070--Hb_002233_160 Hb_005542_070--Hb_003893_180 Hb_000230_410 Hb_000230_410 Hb_005542_070--Hb_000230_410 Hb_000103_070 Hb_000103_070 Hb_005542_070--Hb_000103_070 Hb_012691_020--Hb_003992_020 Hb_001205_040 Hb_001205_040 Hb_012691_020--Hb_001205_040 Hb_003750_120 Hb_003750_120 Hb_012691_020--Hb_003750_120 Hb_001195_550 Hb_001195_550 Hb_012691_020--Hb_001195_550 Hb_001159_090 Hb_001159_090 Hb_012691_020--Hb_001159_090 Hb_002781_040--Hb_012368_050 Hb_005542_120 Hb_005542_120 Hb_002781_040--Hb_005542_120 Hb_002781_040--Hb_000103_070 Hb_000003_280 Hb_000003_280 Hb_002781_040--Hb_000003_280 Hb_001117_050 Hb_001117_050 Hb_002781_040--Hb_001117_050 Hb_005648_020 Hb_005648_020 Hb_003893_180--Hb_005648_020 Hb_003466_010 Hb_003466_010 Hb_003893_180--Hb_003466_010 Hb_002918_270 Hb_002918_270 Hb_003893_180--Hb_002918_270 Hb_000093_010 Hb_000093_010 Hb_003893_180--Hb_000093_010 Hb_002600_120 Hb_002600_120 Hb_003893_180--Hb_002600_120 Hb_002701_030 Hb_002701_030 Hb_003893_180--Hb_002701_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0179446 0.0724348 0.131016 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0121517 0 0.00964278 0.025898

CAGE analysis