Hb_048476_150

Information

Type -
Description -
Location Contig48476: 112831-120065
Sequence    

Annotation

kegg
ID rcu:RCOM_0598030
description Myosin heavy chain, clone, putative
nr
ID XP_012072308.1
description PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
swissprot
ID Q8L7S4
description Microtubule-associated protein 70-2 OS=Arabidopsis thaliana GN=MAP70.2 PE=1 SV=1
trembl
ID A0A067L1Z7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04762 PE=4 SV=1
Gene Ontology
ID GO:0008017
description microtubule-associated protein 70-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44951: 112936-116364 , PASA_asmbl_44952: 116379-116812 , PASA_asmbl_44953: 116826-119891
cDNA
(Sanger)
(ID:Location)		 011_E16.ab1: 119175-119891

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048476_150 0.0 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
2 Hb_002471_180 0.0764412983 - - receptor protein kinase, putative [Ricinus communis]
3 Hb_001021_220 0.1095826819 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
4 Hb_001163_120 0.1105033838 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_013726_080 0.1116494659 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
6 Hb_001377_110 0.1122606684 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
7 Hb_000031_280 0.1136924373 - - -
8 Hb_000139_230 0.1150107087 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
9 Hb_002092_100 0.1152845691 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
10 Hb_011310_130 0.1157687215 - - DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]
11 Hb_001405_190 0.1158209848 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
12 Hb_000085_140 0.1158969996 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
13 Hb_098209_010 0.1162483554 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
14 Hb_002615_120 0.116424067 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
15 Hb_005895_010 0.1169098331 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
16 Hb_065525_130 0.1194304636 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
17 Hb_000608_350 0.1194953711 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
18 Hb_005656_080 0.1195495369 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
19 Hb_005053_010 0.1208206811 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
20 Hb_028227_010 0.1211941147 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]

Gene co-expression network

sample Hb_048476_150 Hb_048476_150 Hb_002471_180 Hb_002471_180 Hb_048476_150--Hb_002471_180 Hb_001021_220 Hb_001021_220 Hb_048476_150--Hb_001021_220 Hb_001163_120 Hb_001163_120 Hb_048476_150--Hb_001163_120 Hb_013726_080 Hb_013726_080 Hb_048476_150--Hb_013726_080 Hb_001377_110 Hb_001377_110 Hb_048476_150--Hb_001377_110 Hb_000031_280 Hb_000031_280 Hb_048476_150--Hb_000031_280 Hb_000139_230 Hb_000139_230 Hb_002471_180--Hb_000139_230 Hb_002471_180--Hb_001021_220 Hb_098209_010 Hb_098209_010 Hb_002471_180--Hb_098209_010 Hb_002902_020 Hb_002902_020 Hb_002471_180--Hb_002902_020 Hb_000376_060 Hb_000376_060 Hb_002471_180--Hb_000376_060 Hb_001021_220--Hb_001377_110 Hb_001789_190 Hb_001789_190 Hb_001021_220--Hb_001789_190 Hb_001021_220--Hb_000139_230 Hb_029904_020 Hb_029904_020 Hb_001021_220--Hb_029904_020 Hb_001268_280 Hb_001268_280 Hb_001021_220--Hb_001268_280 Hb_132840_110 Hb_132840_110 Hb_001021_220--Hb_132840_110 Hb_011310_130 Hb_011310_130 Hb_001163_120--Hb_011310_130 Hb_001163_120--Hb_000031_280 Hb_008556_030 Hb_008556_030 Hb_001163_120--Hb_008556_030 Hb_002942_050 Hb_002942_050 Hb_001163_120--Hb_002942_050 Hb_011609_170 Hb_011609_170 Hb_001163_120--Hb_011609_170 Hb_012404_070 Hb_012404_070 Hb_001163_120--Hb_012404_070 Hb_002539_110 Hb_002539_110 Hb_013726_080--Hb_002539_110 Hb_001486_170 Hb_001486_170 Hb_013726_080--Hb_001486_170 Hb_000915_080 Hb_000915_080 Hb_013726_080--Hb_000915_080 Hb_005463_130 Hb_005463_130 Hb_013726_080--Hb_005463_130 Hb_002054_050 Hb_002054_050 Hb_013726_080--Hb_002054_050 Hb_003430_090 Hb_003430_090 Hb_013726_080--Hb_003430_090 Hb_001377_110--Hb_098209_010 Hb_009771_110 Hb_009771_110 Hb_001377_110--Hb_009771_110 Hb_000457_230 Hb_000457_230 Hb_001377_110--Hb_000457_230 Hb_007929_080 Hb_007929_080 Hb_001377_110--Hb_007929_080 Hb_003186_020 Hb_003186_020 Hb_001377_110--Hb_003186_020 Hb_000031_280--Hb_008556_030 Hb_000599_080 Hb_000599_080 Hb_000031_280--Hb_000599_080 Hb_002681_170 Hb_002681_170 Hb_000031_280--Hb_002681_170 Hb_000031_290 Hb_000031_290 Hb_000031_280--Hb_000031_290 Hb_001418_040 Hb_001418_040 Hb_000031_280--Hb_001418_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.6387 23.2588 43.8773 25.5457 24.1516 40.3757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9224 5.06135 10.1726 13.7153 19.4367

CAGE analysis