Hb_048476_160

Information

Type -
Description -
Location Contig48476: 131823-133010
Sequence    

Annotation

kegg
ID cit:102617634
description F-box protein At5g07610-like
nr
ID KDP27588.1
description hypothetical protein JCGZ_19593 [Jatropha curcas]
swissprot
ID Q9FLS0
description F-box protein At5g07610 OS=Arabidopsis thaliana GN=At5g07610 PE=2 SV=1
trembl
ID A0A067JXN9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19593 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048476_160 0.0 - - hypothetical protein JCGZ_19593 [Jatropha curcas]
2 Hb_158803_020 0.1761482843 - - hypothetical protein JCGZ_12890 [Jatropha curcas]
3 Hb_102129_010 0.1774878148 - - multicopper oxidase, putative [Ricinus communis]
4 Hb_003438_060 0.1895629004 - - -
5 Hb_001147_090 0.2189254061 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
6 Hb_001147_080 0.2387272105 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000483_230 0.2696031007 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
8 Hb_000659_020 0.2846560012 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
9 Hb_145708_010 0.2861005373 - - PREDICTED: transcription factor ILR3-like isoform X1 [Jatropha curcas]
10 Hb_151671_010 0.2886399457 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
11 Hb_107495_050 0.3042906656 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]
12 Hb_010810_040 0.305825059 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
13 Hb_000540_010 0.3070575612 - - PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas]
14 Hb_017524_010 0.3108596707 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
15 Hb_001749_030 0.3166386813 - - -
16 Hb_000046_230 0.3199343607 - - PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
17 Hb_137914_010 0.3214403825 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
18 Hb_001514_060 0.3228296387 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
19 Hb_007137_030 0.3250752306 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
20 Hb_003939_020 0.3252648335 - - PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]

Gene co-expression network

sample Hb_048476_160 Hb_048476_160 Hb_158803_020 Hb_158803_020 Hb_048476_160--Hb_158803_020 Hb_102129_010 Hb_102129_010 Hb_048476_160--Hb_102129_010 Hb_003438_060 Hb_003438_060 Hb_048476_160--Hb_003438_060 Hb_001147_090 Hb_001147_090 Hb_048476_160--Hb_001147_090 Hb_001147_080 Hb_001147_080 Hb_048476_160--Hb_001147_080 Hb_000483_230 Hb_000483_230 Hb_048476_160--Hb_000483_230 Hb_083862_010 Hb_083862_010 Hb_158803_020--Hb_083862_010 Hb_107495_050 Hb_107495_050 Hb_158803_020--Hb_107495_050 Hb_125981_010 Hb_125981_010 Hb_158803_020--Hb_125981_010 Hb_158803_020--Hb_102129_010 Hb_009773_040 Hb_009773_040 Hb_158803_020--Hb_009773_040 Hb_102129_010--Hb_001147_090 Hb_102129_010--Hb_001147_080 Hb_145708_010 Hb_145708_010 Hb_102129_010--Hb_145708_010 Hb_010810_040 Hb_010810_040 Hb_102129_010--Hb_010810_040 Hb_003438_060--Hb_001147_080 Hb_003438_060--Hb_102129_010 Hb_000122_060 Hb_000122_060 Hb_003438_060--Hb_000122_060 Hb_005654_020 Hb_005654_020 Hb_003438_060--Hb_005654_020 Hb_003438_060--Hb_145708_010 Hb_001147_090--Hb_001147_080 Hb_001147_090--Hb_010810_040 Hb_000008_040 Hb_000008_040 Hb_001147_090--Hb_000008_040 Hb_001147_090--Hb_145708_010 Hb_002984_020 Hb_002984_020 Hb_001147_080--Hb_002984_020 Hb_000207_420 Hb_000207_420 Hb_001147_080--Hb_000207_420 Hb_007137_030 Hb_007137_030 Hb_000483_230--Hb_007137_030 Hb_126506_010 Hb_126506_010 Hb_000483_230--Hb_126506_010 Hb_000483_230--Hb_107495_050 Hb_151671_010 Hb_151671_010 Hb_000483_230--Hb_151671_010 Hb_001514_060 Hb_001514_060 Hb_000483_230--Hb_001514_060 Hb_155642_010 Hb_155642_010 Hb_000483_230--Hb_155642_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.565495 0.0141748 0.216021 0.288671 0.0189032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0129413 0

CAGE analysis