Hb_048476_170

Information

Type -
Description -
Location Contig48476: 133528-151458
Sequence    

Annotation

kegg
ID cit:102625782
description cleavage and polyadenylation specificity factor subunit 3-II-like
nr
ID XP_006469322.1
description PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]
swissprot
ID Q8GUU3
description Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2
trembl
ID B9HVV0
description Metallo-beta-lactamase family protein OS=Populus trichocarpa GN=POPTR_0010s11650g PE=4 SV=2
Gene Ontology
ID GO:0008270
description cleavage and polyadenylation specificity factor subunit 3-ii

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44955: 133539-145181 , PASA_asmbl_44956: 135307-137240 , PASA_asmbl_44957: 142994-143234 , PASA_asmbl_44958: 141533-142238 , PASA_asmbl_44959: 146678-150001 , PASA_asmbl_44961: 150002-151279
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048476_170 0.0 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]
2 Hb_002890_180 0.0989469761 - - PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 [Jatropha curcas]
3 Hb_004117_100 0.1010504584 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
4 Hb_001136_090 0.101636093 - - Protein PNS1, putative [Ricinus communis]
5 Hb_000463_140 0.1062882794 - - Poly(rC)-binding protein, putative [Ricinus communis]
6 Hb_000832_130 0.1081277326 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620 [Jatropha curcas]
7 Hb_007304_110 0.1102670665 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
8 Hb_000514_060 0.1122349151 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
9 Hb_000032_470 0.1158741141 - - PREDICTED: uncharacterized protein LOC103415826 [Malus domestica]
10 Hb_064903_010 0.118953104 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
11 Hb_000796_030 0.120843345 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
12 Hb_001322_170 0.1219816694 - - PREDICTED: bax inhibitor 1-like [Jatropha curcas]
13 Hb_000946_120 0.12291643 - - DNA binding protein, putative [Ricinus communis]
14 Hb_005488_150 0.1233544766 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_003988_010 0.1236047437 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
16 Hb_000041_280 0.123719503 - - PREDICTED: probable protein arginine N-methyltransferase 6 [Jatropha curcas]
17 Hb_000072_350 0.1247845905 - - PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]
18 Hb_000335_020 0.125045521 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_126643_010 0.1251647993 - - Protein transport protein Sec24C, putative [Ricinus communis]
20 Hb_000115_160 0.126430037 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]

Gene co-expression network

sample Hb_048476_170 Hb_048476_170 Hb_002890_180 Hb_002890_180 Hb_048476_170--Hb_002890_180 Hb_004117_100 Hb_004117_100 Hb_048476_170--Hb_004117_100 Hb_001136_090 Hb_001136_090 Hb_048476_170--Hb_001136_090 Hb_000463_140 Hb_000463_140 Hb_048476_170--Hb_000463_140 Hb_000832_130 Hb_000832_130 Hb_048476_170--Hb_000832_130 Hb_007304_110 Hb_007304_110 Hb_048476_170--Hb_007304_110 Hb_000796_030 Hb_000796_030 Hb_002890_180--Hb_000796_030 Hb_004718_010 Hb_004718_010 Hb_002890_180--Hb_004718_010 Hb_000072_350 Hb_000072_350 Hb_002890_180--Hb_000072_350 Hb_002188_110 Hb_002188_110 Hb_002890_180--Hb_002188_110 Hb_128743_010 Hb_128743_010 Hb_002890_180--Hb_128743_010 Hb_000313_260 Hb_000313_260 Hb_004117_100--Hb_000313_260 Hb_004117_100--Hb_000463_140 Hb_034432_030 Hb_034432_030 Hb_004117_100--Hb_034432_030 Hb_000853_210 Hb_000853_210 Hb_004117_100--Hb_000853_210 Hb_005488_150 Hb_005488_150 Hb_004117_100--Hb_005488_150 Hb_000041_280 Hb_000041_280 Hb_001136_090--Hb_000041_280 Hb_001136_100 Hb_001136_100 Hb_001136_090--Hb_001136_100 Hb_002367_130 Hb_002367_130 Hb_001136_090--Hb_002367_130 Hb_012132_030 Hb_012132_030 Hb_001136_090--Hb_012132_030 Hb_001502_060 Hb_001502_060 Hb_001136_090--Hb_001502_060 Hb_001136_090--Hb_000072_350 Hb_000463_140--Hb_000041_280 Hb_000514_060 Hb_000514_060 Hb_000463_140--Hb_000514_060 Hb_001243_040 Hb_001243_040 Hb_000463_140--Hb_001243_040 Hb_000574_440 Hb_000574_440 Hb_000463_140--Hb_000574_440 Hb_002025_020 Hb_002025_020 Hb_000463_140--Hb_002025_020 Hb_000951_110 Hb_000951_110 Hb_000832_130--Hb_000951_110 Hb_000832_130--Hb_004718_010 Hb_010578_060 Hb_010578_060 Hb_000832_130--Hb_010578_060 Hb_064903_010 Hb_064903_010 Hb_000832_130--Hb_064903_010 Hb_002471_210 Hb_002471_210 Hb_000832_130--Hb_002471_210 Hb_111985_080 Hb_111985_080 Hb_000832_130--Hb_111985_080 Hb_000363_460 Hb_000363_460 Hb_007304_110--Hb_000363_460 Hb_007943_100 Hb_007943_100 Hb_007304_110--Hb_007943_100 Hb_000358_150 Hb_000358_150 Hb_007304_110--Hb_000358_150 Hb_007304_110--Hb_001136_100 Hb_001322_170 Hb_001322_170 Hb_007304_110--Hb_001322_170 Hb_007304_110--Hb_001136_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.13042 10.2014 5.29572 4.67145 25.1567 11.8338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.05218 5.18591 13.4311 8.60226 7.79683

CAGE analysis