Hb_048538_010

Information

Type -
Description -
Location Contig48538: 170-935
Sequence    

Annotation

kegg
ID pmum:103331238
description probable receptor-like protein kinase At1g67000
nr
ID XP_008232078.1
description PREDICTED: probable receptor-like protein kinase At1g67000 [Prunus mume]
swissprot
ID -
description -
trembl
ID A0A067LE94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23767 PE=3 SV=1
Gene Ontology
ID GO:0016772
description probable receptor-like protein kinase at1g67000 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048538_010 0.0 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Prunus mume]
2 Hb_000347_360 0.0623933827 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
3 Hb_031862_150 0.0651298976 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
4 Hb_000227_410 0.0774870874 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
5 Hb_000904_090 0.0779429443 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
6 Hb_002849_030 0.0933662747 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
7 Hb_073870_020 0.0946932435 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
8 Hb_113396_020 0.0967582834 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
9 Hb_022768_010 0.098732594 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
10 Hb_000086_600 0.0996754921 - - -
11 Hb_000322_020 0.1016592438 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
12 Hb_147137_020 0.1026017918 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
13 Hb_004586_120 0.1060602749 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
14 Hb_005618_020 0.1061483718 - - hypothetical protein RCOM_1342750 [Ricinus communis]
15 Hb_027214_060 0.1071175919 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
16 Hb_000016_220 0.108632657 transcription factor TF Family: AP2 CRT/DRE binding factor 1 [Hevea brasiliensis]
17 Hb_104855_020 0.1200262506 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_142691_010 0.1205997976 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
19 Hb_008579_010 0.1223954825 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
20 Hb_009707_010 0.1231983533 - - PREDICTED: LOW QUALITY PROTEIN: exocyst complex component EXO70B1-like [Jatropha curcas]

Gene co-expression network

sample Hb_048538_010 Hb_048538_010 Hb_000347_360 Hb_000347_360 Hb_048538_010--Hb_000347_360 Hb_031862_150 Hb_031862_150 Hb_048538_010--Hb_031862_150 Hb_000227_410 Hb_000227_410 Hb_048538_010--Hb_000227_410 Hb_000904_090 Hb_000904_090 Hb_048538_010--Hb_000904_090 Hb_002849_030 Hb_002849_030 Hb_048538_010--Hb_002849_030 Hb_073870_020 Hb_073870_020 Hb_048538_010--Hb_073870_020 Hb_000347_360--Hb_073870_020 Hb_000347_360--Hb_000227_410 Hb_000347_360--Hb_002849_030 Hb_000322_020 Hb_000322_020 Hb_000347_360--Hb_000322_020 Hb_027214_060 Hb_027214_060 Hb_000347_360--Hb_027214_060 Hb_022768_010 Hb_022768_010 Hb_031862_150--Hb_022768_010 Hb_147137_020 Hb_147137_020 Hb_031862_150--Hb_147137_020 Hb_031862_150--Hb_000227_410 Hb_000086_600 Hb_000086_600 Hb_031862_150--Hb_000086_600 Hb_142691_010 Hb_142691_010 Hb_031862_150--Hb_142691_010 Hb_000227_410--Hb_000904_090 Hb_000227_410--Hb_027214_060 Hb_002475_110 Hb_002475_110 Hb_000227_410--Hb_002475_110 Hb_009683_060 Hb_009683_060 Hb_000904_090--Hb_009683_060 Hb_104855_020 Hb_104855_020 Hb_000904_090--Hb_104855_020 Hb_000904_090--Hb_002475_110 Hb_167802_010 Hb_167802_010 Hb_000904_090--Hb_167802_010 Hb_002849_030--Hb_073870_020 Hb_002849_030--Hb_000322_020 Hb_009189_010 Hb_009189_010 Hb_002849_030--Hb_009189_010 Hb_000422_050 Hb_000422_050 Hb_002849_030--Hb_000422_050 Hb_073870_020--Hb_027214_060 Hb_073870_020--Hb_009189_010 Hb_073870_020--Hb_000227_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 56.2129 8.55062 6.89637 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0419419 1.71098

CAGE analysis