Hb_048653_010

Information

Type -
Description -
Location Contig48653: 3476-4291
Sequence    

Annotation

kegg
ID rcu:RCOM_1491280
description Mavicyanin, putative
nr
ID XP_012069268.1
description PREDICTED: mavicyanin [Jatropha curcas]
swissprot
ID Q9SK27
description Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2
trembl
ID B9RQG9
description Mavicyanin, putative OS=Ricinus communis GN=RCOM_1491280 PE=4 SV=1
Gene Ontology
ID GO:0009055
description plastocyanin-like domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048653_010 0.0 - - PREDICTED: mavicyanin [Jatropha curcas]
2 Hb_013654_020 0.0001422796 - - putative prolin-rich extensin-like receptor protein kinase family protein [Zea mays]
3 Hb_042239_010 0.0012626982 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
4 Hb_008221_010 0.0037788878 - - hypothetical protein JCGZ_10961 [Jatropha curcas]
5 Hb_000370_050 0.0055409928 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
6 Hb_003702_020 0.0055765261 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
7 Hb_008092_010 0.0060204012 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
8 Hb_007592_010 0.0081669911 - - PREDICTED: uncharacterized protein LOC105118874 [Populus euphratica]
9 Hb_005426_010 0.0083211781 - - polyprotein [Oryza australiensis]
10 Hb_008953_020 0.0087001212 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
11 Hb_000135_040 0.0088921524 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
12 Hb_001817_070 0.0165254217 - - nucleic acid binding protein, putative [Ricinus communis]
13 Hb_002342_040 0.0187068377 - - FERONIA, partial [Arabis alpina]
14 Hb_154646_010 0.019426457 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
15 Hb_122911_010 0.0259087646 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
16 Hb_000045_270 0.0315933335 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010452_030 0.034284213 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
18 Hb_001100_020 0.0356013979 - - -
19 Hb_000238_010 0.03687173 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_039814_010 0.0373547607 - - hypothetical protein JCGZ_05023 [Jatropha curcas]

Gene co-expression network

sample Hb_048653_010 Hb_048653_010 Hb_013654_020 Hb_013654_020 Hb_048653_010--Hb_013654_020 Hb_042239_010 Hb_042239_010 Hb_048653_010--Hb_042239_010 Hb_008221_010 Hb_008221_010 Hb_048653_010--Hb_008221_010 Hb_000370_050 Hb_000370_050 Hb_048653_010--Hb_000370_050 Hb_003702_020 Hb_003702_020 Hb_048653_010--Hb_003702_020 Hb_008092_010 Hb_008092_010 Hb_048653_010--Hb_008092_010 Hb_013654_020--Hb_042239_010 Hb_013654_020--Hb_008221_010 Hb_013654_020--Hb_000370_050 Hb_013654_020--Hb_003702_020 Hb_013654_020--Hb_008092_010 Hb_042239_010--Hb_000370_050 Hb_042239_010--Hb_003702_020 Hb_042239_010--Hb_008092_010 Hb_042239_010--Hb_008221_010 Hb_008953_020 Hb_008953_020 Hb_008221_010--Hb_008953_020 Hb_000135_040 Hb_000135_040 Hb_008221_010--Hb_000135_040 Hb_008221_010--Hb_000370_050 Hb_000370_050--Hb_003702_020 Hb_000370_050--Hb_008092_010 Hb_007592_010 Hb_007592_010 Hb_000370_050--Hb_007592_010 Hb_005426_010 Hb_005426_010 Hb_000370_050--Hb_005426_010 Hb_003702_020--Hb_008092_010 Hb_003702_020--Hb_007592_010 Hb_003702_020--Hb_005426_010 Hb_008092_010--Hb_007592_010 Hb_008092_010--Hb_005426_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.120922 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0543918 0

CAGE analysis