Hb_048653_020

Information

Type -
Description -
Location Contig48653: 4922-7421
Sequence    

Annotation

kegg
ID rcu:RCOM_1491300
description ankyrin repeat-containing protein, putative
nr
ID XP_002515990.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID B9RQH1
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1491300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44986: 6031-7055
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048653_020 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_002918_150 0.1271060123 transcription factor TF Family: ERF ethylene-responsive element binding protein 1 [Hevea brasiliensis]
3 Hb_138575_010 0.1284032998 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
4 Hb_013057_030 0.136645427 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002217_440 0.153049386 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
6 Hb_003086_050 0.18002406 - - calcium-dependent protein kinase, putative [Ricinus communis]
7 Hb_002272_140 0.1818257314 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
8 Hb_000000_140 0.1878323722 - - -
9 Hb_012702_010 0.189489947 - - PREDICTED: TMV resistance protein N-like isoform X4 [Vitis vinifera]
10 Hb_000997_110 0.1905114639 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
11 Hb_001377_500 0.191531565 - - DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa]
12 Hb_015978_030 0.1915684776 - - Zinc finger protein GIS2 [Medicago truncatula]
13 Hb_008616_060 0.1976841406 - - syntaxin, putative [Ricinus communis]
14 Hb_000103_400 0.1980178924 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
15 Hb_000220_090 0.1982793272 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
16 Hb_011120_020 0.1996056874 - - PREDICTED: casein kinase I-like isoform X1 [Jatropha curcas]
17 Hb_116349_050 0.2000263906 - - formin homology 2 domain-containing family protein [Populus trichocarpa]
18 Hb_005157_010 0.2009745256 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
19 Hb_002686_400 0.2010195676 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
20 Hb_116635_010 0.2010653253 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]

Gene co-expression network

sample Hb_048653_020 Hb_048653_020 Hb_002918_150 Hb_002918_150 Hb_048653_020--Hb_002918_150 Hb_138575_010 Hb_138575_010 Hb_048653_020--Hb_138575_010 Hb_013057_030 Hb_013057_030 Hb_048653_020--Hb_013057_030 Hb_002217_440 Hb_002217_440 Hb_048653_020--Hb_002217_440 Hb_003086_050 Hb_003086_050 Hb_048653_020--Hb_003086_050 Hb_002272_140 Hb_002272_140 Hb_048653_020--Hb_002272_140 Hb_011120_020 Hb_011120_020 Hb_002918_150--Hb_011120_020 Hb_000809_080 Hb_000809_080 Hb_002918_150--Hb_000809_080 Hb_000220_090 Hb_000220_090 Hb_002918_150--Hb_000220_090 Hb_002918_150--Hb_138575_010 Hb_009838_060 Hb_009838_060 Hb_002918_150--Hb_009838_060 Hb_102100_010 Hb_102100_010 Hb_138575_010--Hb_102100_010 Hb_009897_020 Hb_009897_020 Hb_138575_010--Hb_009897_020 Hb_116635_010 Hb_116635_010 Hb_138575_010--Hb_116635_010 Hb_000015_180 Hb_000015_180 Hb_138575_010--Hb_000015_180 Hb_001504_270 Hb_001504_270 Hb_138575_010--Hb_001504_270 Hb_013057_030--Hb_002217_440 Hb_048653_040 Hb_048653_040 Hb_013057_030--Hb_048653_040 Hb_000172_300 Hb_000172_300 Hb_013057_030--Hb_000172_300 Hb_116349_050 Hb_116349_050 Hb_013057_030--Hb_116349_050 Hb_013057_030--Hb_003086_050 Hb_001810_010 Hb_001810_010 Hb_002217_440--Hb_001810_010 Hb_000417_290 Hb_000417_290 Hb_002217_440--Hb_000417_290 Hb_008616_060 Hb_008616_060 Hb_002217_440--Hb_008616_060 Hb_002217_440--Hb_048653_040 Hb_000307_110 Hb_000307_110 Hb_003086_050--Hb_000307_110 Hb_015978_030 Hb_015978_030 Hb_003086_050--Hb_015978_030 Hb_003086_050--Hb_116349_050 Hb_000103_400 Hb_000103_400 Hb_003086_050--Hb_000103_400 Hb_012702_010 Hb_012702_010 Hb_002272_140--Hb_012702_010 Hb_002272_140--Hb_000103_400 Hb_138628_010 Hb_138628_010 Hb_002272_140--Hb_138628_010 Hb_019961_010 Hb_019961_010 Hb_002272_140--Hb_019961_010 Hb_002284_020 Hb_002284_020 Hb_002272_140--Hb_002284_020 Hb_000473_080 Hb_000473_080 Hb_002272_140--Hb_000473_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.15693 52.6048 2.23808 5.99556 2.13129 1.13807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.17447 1.23664 2.18688 8.71757 0.430137

CAGE analysis