Hb_048653_040

Information

Type -
Description -
Location Contig48653: 27164-28838
Sequence    

Annotation

kegg
ID pop:POPTR_0001s18810g
description POPTRDRAFT_171738; ankyrin repeat family protein
nr
ID XP_002299729.2
description ankyrin repeat family protein [Populus trichocarpa]
swissprot
ID Q9ZU96
description Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=2 SV=1
trembl
ID B9GGL1
description Ankyrin repeat family protein OS=Populus trichocarpa GN=POPTR_0001s18810g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048653_040 0.0 - - ankyrin repeat family protein [Populus trichocarpa]
2 Hb_000172_300 0.0999758223 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
3 Hb_000039_100 0.1004829759 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
4 Hb_011054_030 0.1128890943 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
5 Hb_001437_200 0.1133817935 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
6 Hb_055706_010 0.1216398344 - - hypothetical protein JCGZ_22222 [Jatropha curcas]
7 Hb_116349_050 0.1221384075 - - formin homology 2 domain-containing family protein [Populus trichocarpa]
8 Hb_008707_020 0.126245479 - - ATP binding protein, putative [Ricinus communis]
9 Hb_004656_030 0.1270082789 - - putative pectin methylesterase family protein [Populus trichocarpa]
10 Hb_013057_030 0.1272171245 - - conserved hypothetical protein [Ricinus communis]
11 Hb_029866_140 0.1285996943 - - PREDICTED: hevamine-A [Jatropha curcas]
12 Hb_001376_020 0.1333222532 - - hypothetical protein JCGZ_01547 [Jatropha curcas]
13 Hb_001486_130 0.1338951088 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
14 Hb_003847_140 0.1338978339 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
15 Hb_004161_010 0.1349851996 - - hypothetical protein JCGZ_21278 [Jatropha curcas]
16 Hb_001749_020 0.1370697223 - - hypothetical protein CISIN_1g042220mg, partial [Citrus sinensis]
17 Hb_174829_040 0.1391460577 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
18 Hb_000656_360 0.1394329597 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
19 Hb_027913_010 0.1469191668 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_000627_140 0.1498040829 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_048653_040 Hb_048653_040 Hb_000172_300 Hb_000172_300 Hb_048653_040--Hb_000172_300 Hb_000039_100 Hb_000039_100 Hb_048653_040--Hb_000039_100 Hb_011054_030 Hb_011054_030 Hb_048653_040--Hb_011054_030 Hb_001437_200 Hb_001437_200 Hb_048653_040--Hb_001437_200 Hb_055706_010 Hb_055706_010 Hb_048653_040--Hb_055706_010 Hb_116349_050 Hb_116349_050 Hb_048653_040--Hb_116349_050 Hb_000172_300--Hb_000039_100 Hb_000172_300--Hb_116349_050 Hb_000172_300--Hb_011054_030 Hb_174829_040 Hb_174829_040 Hb_000172_300--Hb_174829_040 Hb_012702_010 Hb_012702_010 Hb_000172_300--Hb_012702_010 Hb_000039_100--Hb_011054_030 Hb_001274_040 Hb_001274_040 Hb_000039_100--Hb_001274_040 Hb_000039_100--Hb_001437_200 Hb_005081_060 Hb_005081_060 Hb_000039_100--Hb_005081_060 Hb_005054_300 Hb_005054_300 Hb_011054_030--Hb_005054_300 Hb_021596_070 Hb_021596_070 Hb_011054_030--Hb_021596_070 Hb_111985_060 Hb_111985_060 Hb_011054_030--Hb_111985_060 Hb_008667_020 Hb_008667_020 Hb_011054_030--Hb_008667_020 Hb_029866_140 Hb_029866_140 Hb_011054_030--Hb_029866_140 Hb_004161_010 Hb_004161_010 Hb_001437_200--Hb_004161_010 Hb_027913_010 Hb_027913_010 Hb_001437_200--Hb_027913_010 Hb_004656_030 Hb_004656_030 Hb_001437_200--Hb_004656_030 Hb_003847_140 Hb_003847_140 Hb_001437_200--Hb_003847_140 Hb_001437_200--Hb_005081_060 Hb_005882_020 Hb_005882_020 Hb_055706_010--Hb_005882_020 Hb_089140_020 Hb_089140_020 Hb_055706_010--Hb_089140_020 Hb_035391_010 Hb_035391_010 Hb_055706_010--Hb_035391_010 Hb_000522_120 Hb_000522_120 Hb_055706_010--Hb_000522_120 Hb_189242_010 Hb_189242_010 Hb_055706_010--Hb_189242_010 Hb_116349_050--Hb_174829_040 Hb_000414_100 Hb_000414_100 Hb_116349_050--Hb_000414_100 Hb_002042_190 Hb_002042_190 Hb_116349_050--Hb_002042_190 Hb_116349_050--Hb_000039_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.10564 43.7297 2.06885 2.90649 0.328441 0.0737451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.643354 0.0632594 0.176587 4.2567 0.392919

CAGE analysis