Hb_048848_010

Information

Type -
Description -
Location Contig48848: 1-705
Sequence    

Annotation

kegg
ID pop:POPTR_0005s07810g
description POPTRDRAFT_558545; hypothetical protein
nr
ID XP_002307092.2
description hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H535
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s07810g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45161: 92-811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048848_010 0.0 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
2 Hb_003525_020 0.1382525527 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000362_090 0.1477870421 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
4 Hb_001091_030 0.1493013752 - - hypothetical protein AALP_AA1G173500 [Arabis alpina]
5 Hb_010398_010 0.1500749961 - - PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 15a-like [Malus domestica]
6 Hb_000538_190 0.1530074516 - - PREDICTED: protein DJ-1 homolog D [Jatropha curcas]
7 Hb_001351_040 0.1702725099 - - PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
8 Hb_002903_130 0.1731757406 - - epoxide hydrolase, putative [Ricinus communis]
9 Hb_020178_060 0.1744217681 - - PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]
10 Hb_001608_020 0.1746539634 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001584_010 0.1762494992 - - kelch repeat protein, putative [Ricinus communis]
12 Hb_000977_010 0.182083851 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
13 Hb_089100_040 0.1864458043 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
14 Hb_001699_150 0.1966872684 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
15 Hb_000189_120 0.1970235361 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
16 Hb_009193_110 0.2005439508 - - PREDICTED: wall-associated receptor kinase-like 1 isoform X1 [Jatropha curcas]
17 Hb_011716_110 0.2017855411 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
18 Hb_001369_770 0.2019751344 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
19 Hb_001409_050 0.2040710802 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_020178_050 0.2046804993 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]

Gene co-expression network

sample Hb_048848_010 Hb_048848_010 Hb_003525_020 Hb_003525_020 Hb_048848_010--Hb_003525_020 Hb_000362_090 Hb_000362_090 Hb_048848_010--Hb_000362_090 Hb_001091_030 Hb_001091_030 Hb_048848_010--Hb_001091_030 Hb_010398_010 Hb_010398_010 Hb_048848_010--Hb_010398_010 Hb_000538_190 Hb_000538_190 Hb_048848_010--Hb_000538_190 Hb_001351_040 Hb_001351_040 Hb_048848_010--Hb_001351_040 Hb_003525_020--Hb_000538_190 Hb_001369_770 Hb_001369_770 Hb_003525_020--Hb_001369_770 Hb_001584_010 Hb_001584_010 Hb_003525_020--Hb_001584_010 Hb_010261_010 Hb_010261_010 Hb_003525_020--Hb_010261_010 Hb_003525_020--Hb_000362_090 Hb_009193_110 Hb_009193_110 Hb_000362_090--Hb_009193_110 Hb_004800_240 Hb_004800_240 Hb_000362_090--Hb_004800_240 Hb_001699_150 Hb_001699_150 Hb_000362_090--Hb_001699_150 Hb_089100_040 Hb_089100_040 Hb_000362_090--Hb_089100_040 Hb_004162_120 Hb_004162_120 Hb_000362_090--Hb_004162_120 Hb_148682_010 Hb_148682_010 Hb_000362_090--Hb_148682_010 Hb_001817_130 Hb_001817_130 Hb_001091_030--Hb_001817_130 Hb_001091_030--Hb_010398_010 Hb_159411_010 Hb_159411_010 Hb_001091_030--Hb_159411_010 Hb_001091_030--Hb_000362_090 Hb_007380_040 Hb_007380_040 Hb_001091_030--Hb_007380_040 Hb_001608_020 Hb_001608_020 Hb_010398_010--Hb_001608_020 Hb_010398_010--Hb_000362_090 Hb_010398_010--Hb_001351_040 Hb_000120_970 Hb_000120_970 Hb_010398_010--Hb_000120_970 Hb_000107_560 Hb_000107_560 Hb_010398_010--Hb_000107_560 Hb_000538_190--Hb_001369_770 Hb_020178_050 Hb_020178_050 Hb_000538_190--Hb_020178_050 Hb_002942_110 Hb_002942_110 Hb_000538_190--Hb_002942_110 Hb_004976_060 Hb_004976_060 Hb_000538_190--Hb_004976_060 Hb_000538_190--Hb_089100_040 Hb_000977_010 Hb_000977_010 Hb_001351_040--Hb_000977_010 Hb_000315_030 Hb_000315_030 Hb_001351_040--Hb_000315_030 Hb_003384_070 Hb_003384_070 Hb_001351_040--Hb_003384_070 Hb_003640_030 Hb_003640_030 Hb_001351_040--Hb_003640_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.79683 28.6308 6.79577 7.61172 9.78071 4.47479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.640869 0 0.449855 19.6986 2.36861

CAGE analysis