Hb_048874_010

Information

Type -
Description -
Location Contig48874: 710-1501
Sequence    

Annotation

kegg
ID pop:POPTR_0016s10870g
description POPTRDRAFT_257170; hypothetical protein
nr
ID XP_002322908.2
description hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
swissprot
ID Q9M2S9
description Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1
trembl
ID B9IFT8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s10870g PE=3 SV=2
Gene Ontology
ID GO:0005576
description expansin-a9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048874_010 0.0 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
2 Hb_169574_010 0.0025465204 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]
3 Hb_005799_040 0.0062797337 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
4 Hb_008246_050 0.0063259289 - - -
5 Hb_127993_010 0.0497174302 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
6 Hb_162126_010 0.0694729458 - - -
7 Hb_054362_010 0.0723171202 - - PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas]
8 Hb_000430_010 0.0887499916 - - -
9 Hb_125847_010 0.1048460776 - - -
10 Hb_005285_010 0.1560401969 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
11 Hb_168311_010 0.1616546595 - - -
12 Hb_000139_440 0.184057988 - - unnamed protein product [Coffea canephora]
13 Hb_000590_020 0.1946808243 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
14 Hb_047040_010 0.1992267657 - - integrase [Gossypium herbaceum]
15 Hb_022206_060 0.2073370158 - - -
16 Hb_001956_030 0.2078668761 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Populus euphratica]
17 Hb_089173_010 0.211212444 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
18 Hb_090826_010 0.2116084921 - - PREDICTED: uncharacterized protein LOC105786910 [Gossypium raimondii]
19 Hb_000876_040 0.2153646977 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
20 Hb_030928_010 0.2162204801 - - -

Gene co-expression network

sample Hb_048874_010 Hb_048874_010 Hb_169574_010 Hb_169574_010 Hb_048874_010--Hb_169574_010 Hb_005799_040 Hb_005799_040 Hb_048874_010--Hb_005799_040 Hb_008246_050 Hb_008246_050 Hb_048874_010--Hb_008246_050 Hb_127993_010 Hb_127993_010 Hb_048874_010--Hb_127993_010 Hb_162126_010 Hb_162126_010 Hb_048874_010--Hb_162126_010 Hb_054362_010 Hb_054362_010 Hb_048874_010--Hb_054362_010 Hb_169574_010--Hb_005799_040 Hb_169574_010--Hb_008246_050 Hb_169574_010--Hb_127993_010 Hb_169574_010--Hb_054362_010 Hb_169574_010--Hb_162126_010 Hb_005799_040--Hb_008246_050 Hb_005799_040--Hb_127993_010 Hb_005799_040--Hb_162126_010 Hb_005799_040--Hb_054362_010 Hb_008246_050--Hb_127993_010 Hb_008246_050--Hb_162126_010 Hb_008246_050--Hb_054362_010 Hb_127993_010--Hb_054362_010 Hb_127993_010--Hb_162126_010 Hb_000430_010 Hb_000430_010 Hb_162126_010--Hb_000430_010 Hb_125847_010 Hb_125847_010 Hb_162126_010--Hb_125847_010 Hb_054362_010--Hb_162126_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.13973 0.0983935 0

CAGE analysis