Hb_048937_040

Information

Type -
Description -
Location Contig48937: 21385-22535
Sequence    

Annotation

kegg
ID rcu:RCOM_0231800
description APO protein 4, mitochondrial precursor, putative
nr
ID XP_002527241.1
description APO protein 4, mitochondrial precursor, putative [Ricinus communis]
swissprot
ID Q9LSZ0
description APO protein 4, mitochondrial OS=Arabidopsis thaliana GN=APO4 PE=2 SV=2
trembl
ID B9SMM2
description APO protein 4, mitochondrial, putative OS=Ricinus communis GN=RCOM_0231800 PE=4 SV=1
Gene Ontology
ID GO:0003723
description apo protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45169: 20078-21563
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048937_040 0.0 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
2 Hb_010457_030 0.0489594473 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
3 Hb_003175_010 0.0576022189 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
4 Hb_004724_200 0.0579952219 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
5 Hb_000010_330 0.0580207301 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
6 Hb_001301_200 0.0587553686 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
7 Hb_010139_040 0.0623103024 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000392_300 0.0623855349 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
9 Hb_003195_070 0.0650139452 - - Uncharacterized protein isoform 1 [Theobroma cacao]
10 Hb_004447_060 0.0669279981 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
11 Hb_000089_220 0.0682509777 - - PREDICTED: protein FAM133-like [Populus euphratica]
12 Hb_006185_050 0.0685684953 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
13 Hb_000395_170 0.0686643628 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
14 Hb_000808_270 0.0687632198 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
15 Hb_004109_090 0.06993944 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_003728_080 0.0701626081 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
17 Hb_003766_040 0.070262673 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_019280_040 0.0704461846 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000072_220 0.0708941807 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
20 Hb_007904_200 0.0712573794 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_048937_040 Hb_048937_040 Hb_010457_030 Hb_010457_030 Hb_048937_040--Hb_010457_030 Hb_003175_010 Hb_003175_010 Hb_048937_040--Hb_003175_010 Hb_004724_200 Hb_004724_200 Hb_048937_040--Hb_004724_200 Hb_000010_330 Hb_000010_330 Hb_048937_040--Hb_000010_330 Hb_001301_200 Hb_001301_200 Hb_048937_040--Hb_001301_200 Hb_010139_040 Hb_010139_040 Hb_048937_040--Hb_010139_040 Hb_010457_030--Hb_000010_330 Hb_019280_040 Hb_019280_040 Hb_010457_030--Hb_019280_040 Hb_007904_200 Hb_007904_200 Hb_010457_030--Hb_007904_200 Hb_000365_390 Hb_000365_390 Hb_010457_030--Hb_000365_390 Hb_010457_030--Hb_003175_010 Hb_000808_270 Hb_000808_270 Hb_003175_010--Hb_000808_270 Hb_000926_280 Hb_000926_280 Hb_003175_010--Hb_000926_280 Hb_003175_010--Hb_019280_040 Hb_000030_300 Hb_000030_300 Hb_003175_010--Hb_000030_300 Hb_003766_040 Hb_003766_040 Hb_003175_010--Hb_003766_040 Hb_002030_030 Hb_002030_030 Hb_004724_200--Hb_002030_030 Hb_002811_360 Hb_002811_360 Hb_004724_200--Hb_002811_360 Hb_004724_200--Hb_001301_200 Hb_004109_090 Hb_004109_090 Hb_004724_200--Hb_004109_090 Hb_001199_020 Hb_001199_020 Hb_004724_200--Hb_001199_020 Hb_000010_330--Hb_007904_200 Hb_000010_330--Hb_019280_040 Hb_003665_060 Hb_003665_060 Hb_000010_330--Hb_003665_060 Hb_002200_080 Hb_002200_080 Hb_000010_330--Hb_002200_080 Hb_007163_090 Hb_007163_090 Hb_001301_200--Hb_007163_090 Hb_023344_030 Hb_023344_030 Hb_001301_200--Hb_023344_030 Hb_004447_060 Hb_004447_060 Hb_001301_200--Hb_004447_060 Hb_001680_010 Hb_001680_010 Hb_001301_200--Hb_001680_010 Hb_004221_020 Hb_004221_020 Hb_010139_040--Hb_004221_020 Hb_000072_220 Hb_000072_220 Hb_010139_040--Hb_000072_220 Hb_010139_040--Hb_010457_030 Hb_003728_080 Hb_003728_080 Hb_010139_040--Hb_003728_080 Hb_002835_370 Hb_002835_370 Hb_010139_040--Hb_002835_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.03761 0.93526 0.83108 1.00709 1.8941 2.48383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.29266 1.62665 1.79452 0.997978 0.83096

CAGE analysis